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The map label for this gene is oprD [H]

Identifier: 66045966

GI number: 66045966

Start: 3313111

End: 3314433

Strand: Reverse

Name: oprD [H]

Synonym: Psyr_2730

Alternate gene names: 66045966

Gene position: 3314433-3313111 (Counterclockwise)

Preceding gene: 66045968

Following gene: 66045964

Centisome position: 54.39

GC content: 60.09

Gene sequence:

>1323_bases
ATGTCGAAGCTCGCTCATGATGCAGCAAGCACTGTGTCAGCTCCCTTTTTTCGTGGAAAACGTTGTGGCCTTGCGCTGGG
CCTGCTGGGTATCAGTGCCATTCCCGACCCGTCACAGGCGCAGGGTTTTCTGGATGACAGCCATGGCACACTGACGCTGC
GCAACTATTATATGGACCGCGATTACAAGGATGATGGCACCAGGACTGCGACTCGGGAGTGGGCGCAGGGCTTCATCATG
AATGCGGAGTCCGGCTTTACCCAAGGGCCGGTGGGGTTCGGCCTCGATGCGCGAGCGCTGGTCGGCGTGAAGCTGGATTC
CTCGCCAGACCGCAGCGGCACCGAGCTGTTGCCGGTATCCGCCAGTGATGGCCGGGCGGCTGACGAGTATTCGCGGCTGG
CCCTGACCGGCAAGCTGAAATTCCACGAAACCACGCTCAAGACCGGTGACGTGTCGATTTTCCTGCCATTCGCCTTCGCC
AGCCCCTCGCGACTGTTGCCGCAGACCTTCCGTGGCACCACGCTGACCTCGAAGGATATAGATGACCTGACCCTCCATGC
GGGCTACATCGACCGCGTCAACAAGCGTGACTCCAGCAACTACCAGCCCATCAGCATCGCTTCACCGAACCGCCGTTTCA
ACGGGGCGGCAACGTCGTCGCACATGGCTTATGCCGGAGGCGATTATCAGGTCAACAAGGACCTGAGCCTGCGTGTGTAT
CACGCCGAAGTAGACGATCTCTATACCCAGAACACTCTGGCCCTGTTGCACAAGCTGGCGATTGGCGACGGCGAACTGAC
CACCGATCTGCGCAGCTTTTTCAGCCGCGATACCGGCAGCGCGAAAGCCGGCGAAGTCGACAACCAGAACCTGTCCGCGT
TGCTCGGCTACAGGTGGGGAGGGCACAGCGTCAGCCTTGGCTACATGCATTCCAGTGGCGACACGGCGACGCCTTATGTC
TCGGGCACCGAGCTGATGGGGCTGAGCGAGATGACCATGAGCTCTGACTTCCTCAACGCCAAGGAGCGCACCTGGCAAGC
TATCTACGACTATGACTTCACGGCGGTCGGGCTGGTCGGGCTGCGCAGTCGCCTGCGTTATGTGCGCGGCGACAACATCG
AGCTGGCCGCTTTCAATGCCGATGATCGCAAGGAGCGTGAGTTTCAGATGGAGCTGGGCTACGTTGTGCAAAGCGGTCCA
CTGAAGAACGTCGGGCTGCTGGCGCGCAAGTCGATCTATCGCAACGATTTCCCGGCAGGTGCAGCCTTTCGTGACGAGAA
CCAGACACGCTTCATCGTGCAATACAGCTTGCCGCTCTGGTAA

Upstream 100 bases:

>100_bases
GGATTGACGTCGCCGCTGAATATTTCAATTCTCTGCTCACGGACCTGCAATCAAGCGCCGGACCGACTCCAAAAACAACA
ACAATAAGTGGACACCGAAC

Downstream 100 bases:

>100_bases
CCACCCCGCCTTGACGGCAGGGAAGCCGTTTACGATTGATACACCTTTTTCAGCAACCTGAGCAGGTCCTGACGTTCCTT
CTGATCCAGCGCGGCAGTGG

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MSKLAHDAASTVSAPFFRGKRCGLALGLLGISAIPDPSQAQGFLDDSHGTLTLRNYYMDRDYKDDGTRTATREWAQGFIM
NAESGFTQGPVGFGLDARALVGVKLDSSPDRSGTELLPVSASDGRAADEYSRLALTGKLKFHETTLKTGDVSIFLPFAFA
SPSRLLPQTFRGTTLTSKDIDDLTLHAGYIDRVNKRDSSNYQPISIASPNRRFNGAATSSHMAYAGGDYQVNKDLSLRVY
HAEVDDLYTQNTLALLHKLAIGDGELTTDLRSFFSRDTGSAKAGEVDNQNLSALLGYRWGGHSVSLGYMHSSGDTATPYV
SGTELMGLSEMTMSSDFLNAKERTWQAIYDYDFTAVGLVGLRSRLRYVRGDNIELAAFNADDRKEREFQMELGYVVQSGP
LKNVGLLARKSIYRNDFPAGAAFRDENQTRFIVQYSLPLW

Sequences:

>Translated_440_residues
MSKLAHDAASTVSAPFFRGKRCGLALGLLGISAIPDPSQAQGFLDDSHGTLTLRNYYMDRDYKDDGTRTATREWAQGFIM
NAESGFTQGPVGFGLDARALVGVKLDSSPDRSGTELLPVSASDGRAADEYSRLALTGKLKFHETTLKTGDVSIFLPFAFA
SPSRLLPQTFRGTTLTSKDIDDLTLHAGYIDRVNKRDSSNYQPISIASPNRRFNGAATSSHMAYAGGDYQVNKDLSLRVY
HAEVDDLYTQNTLALLHKLAIGDGELTTDLRSFFSRDTGSAKAGEVDNQNLSALLGYRWGGHSVSLGYMHSSGDTATPYV
SGTELMGLSEMTMSSDFLNAKERTWQAIYDYDFTAVGLVGLRSRLRYVRGDNIELAAFNADDRKEREFQMELGYVVQSGP
LKNVGLLARKSIYRNDFPAGAAFRDENQTRFIVQYSLPLW
>Mature_439_residues
SKLAHDAASTVSAPFFRGKRCGLALGLLGISAIPDPSQAQGFLDDSHGTLTLRNYYMDRDYKDDGTRTATREWAQGFIMN
AESGFTQGPVGFGLDARALVGVKLDSSPDRSGTELLPVSASDGRAADEYSRLALTGKLKFHETTLKTGDVSIFLPFAFAS
PSRLLPQTFRGTTLTSKDIDDLTLHAGYIDRVNKRDSSNYQPISIASPNRRFNGAATSSHMAYAGGDYQVNKDLSLRVYH
AEVDDLYTQNTLALLHKLAIGDGELTTDLRSFFSRDTGSAKAGEVDNQNLSALLGYRWGGHSVSLGYMHSSGDTATPYVS
GTELMGLSEMTMSSDFLNAKERTWQAIYDYDFTAVGLVGLRSRLRYVRGDNIELAAFNADDRKEREFQMELGYVVQSGPL
KNVGLLARKSIYRNDFPAGAAFRDENQTRFIVQYSLPLW

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 48362; Mature: 48230

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAHDAASTVSAPFFRGKRCGLALGLLGISAIPDPSQAQGFLDDSHGTLTLRNYYMDR
CCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHCCCCCCHHCCCCEECCCCEEEEEEEEECC
DYKDDGTRTATREWAQGFIMNAESGFTQGPVGFGLDARALVGVKLDSSPDRSGTELLPVS
CCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
ASDGRAADEYSRLALTGKLKFHETTLKTGDVSIFLPFAFASPSRLLPQTFRGTTLTSKDI
CCCCCCCHHHHEEEEEEEEEEEEEEECCCCEEEEEEEEECCCHHHCCHHHCCCEECCCCC
DDLTLHAGYIDRVNKRDSSNYQPISIASPNRRFNGAATSSHMAYAGGDYQVNKDLSLRVY
CCEEEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEE
HAEVDDLYTQNTLALLHKLAIGDGELTTDLRSFFSRDTGSAKAGEVDNQNLSALLGYRWG
EECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
GHSVSLGYMHSSGDTATPYVSGTELMGLSEMTMSSDFLNAKERTWQAIYDYDFTAVGLVG
CCEEEEEEEECCCCCCCCEECCCCCCCCHHHHHCHHHHCHHHHHEEEEECCCCHHHHHHH
LRSRLRYVRGDNIELAAFNADDRKEREFQMELGYVVQSGPLKNVGLLARKSIYRNDFPAG
HHHHHHHHCCCCEEEEEECCCCCHHHHHEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
AAFRDENQTRFIVQYSLPLW
CEECCCCCEEEEEEECCCCC
>Mature Secondary Structure 
SKLAHDAASTVSAPFFRGKRCGLALGLLGISAIPDPSQAQGFLDDSHGTLTLRNYYMDR
CCHHHHHHHHHCCCCCCCCCCCEEEEEHHHCCCCCCHHCCCCEECCCCEEEEEEEEECC
DYKDDGTRTATREWAQGFIMNAESGFTQGPVGFGLDARALVGVKLDSSPDRSGTELLPVS
CCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
ASDGRAADEYSRLALTGKLKFHETTLKTGDVSIFLPFAFASPSRLLPQTFRGTTLTSKDI
CCCCCCCHHHHEEEEEEEEEEEEEEECCCCEEEEEEEEECCCHHHCCHHHCCCEECCCCC
DDLTLHAGYIDRVNKRDSSNYQPISIASPNRRFNGAATSSHMAYAGGDYQVNKDLSLRVY
CCEEEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEE
HAEVDDLYTQNTLALLHKLAIGDGELTTDLRSFFSRDTGSAKAGEVDNQNLSALLGYRWG
EECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
GHSVSLGYMHSSGDTATPYVSGTELMGLSEMTMSSDFLNAKERTWQAIYDYDFTAVGLVG
CCEEEEEEEECCCCCCCCEECCCCCCCCHHHHHCHHHHCHHHHHEEEEECCCCHHHHHHH
LRSRLRYVRGDNIELAAFNADDRKEREFQMELGYVVQSGPLKNVGLLARKSIYRNDFPAG
HHHHHHHHCCCCEEEEEECCCCCHHHHHEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
AAFRDENQTRFIVQYSLPLW
CEECCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]