| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is rhbF [H]
Identifier: 66045823
GI number: 66045823
Start: 3032283
End: 3034142
Strand: Direct
Name: rhbF [H]
Synonym: Psyr_2587
Alternate gene names: 66045823
Gene position: 3032283-3034142 (Clockwise)
Preceding gene: 66045822
Following gene: 66045824
Centisome position: 49.76
GC content: 61.18
Gene sequence:
>1860_bases ATGGCTACCCCTTTACCGCTGCAACGTAACGCCGCTTCGACAACGACAACAGCTGGTACTGGTGCCTGGCTGGCCGACGT CAGCGCCGAGCGCTATCAGCAAGTACAACGCCGCGTGATCGGCCAACTGCTGCAGACCTTGCTGTACGAGGCGGCGCTGC CGTACCGCTGTGAGCCGCTGGATGATCATCGGCATCGTTTTGCCGTGGCCGTGAGTGGCGGTGTGGAATACCGCTGCGAG GGCCTGCTGAGCACCAGCTTTGAGCTGATCCGCCTCGATCACGCCACGCTTGAGCGGGTGGACAGTGCCGGCGAACGCAG CGTGCCGGATCTGCATCTGGCGTTGACCGAGCTGCTCAGCCCGTTCAAGGACAGCCCGCACCTGACGCGCTTCATCCAGG AAATCGAGCAGACCCAGCTCAAGGACCTGCAGGCCCGCACCCAGGGCTATCAGCCTGCAAGACCAGCGCATCAGCTCGAT GTCGATGCGCTGGAGCAGCATTTCATGGATGCCCACAGCTACCACCCGTGTTACAAGTCGCGAATCGGCTTTTCCCTGGC CGATAACCGCCACTACGGGCCGGAATTTGCCACGCCTTTCGCGGTGGTCTGGCTGGCCGTGGCGAAATCGAGCGCCTCGG TCGGCCATTCGCGGAGCATGGATTTTCAGGCGTTCATCCGTCAGGAGCTGGGCACACAACGCTGGCAGGAAATAGCTCGA GAACTGGCCGCGCGGGGCAAGTCCATCGACGACTATCAACTGATGCCGGTGCATCCGTGGCAGTGGGACAACGTCACGGT GTCGACCTTCTACCCGGAACTGGCCAGCGGCGAGCTGATTTATCTGGGCACCTCGACCGATAGCTACAAGGCTCAGCAGT CGATTCGCACACTGGCCAACGCCAGTCAGCCCCAGCGGCCATACGTCAAGCTGGCGATGAGCATGACCAACACCTCCAGC ACGCGGATTCTGGCGCGTCACACGGTGTTGAACGGCCCGATCATCACCGATTGGCTGCACCAGCTGATCGCAACCGACAG CACCGCTCAAGCGCTGAATTTCGTGATTCTCGGTGAGGTAGCGGGGGTGAGTTTCGATTACCGCCATCTGCCGGAATCGC GTTCGGCGCAGACCTACGGCACGCTGGGTGCCATCTGGCGGGAAAGCCTGCATCAATACCTCCGGGACGACGAGCAGGCG GTGCCGTTCAACGGATTGAGCCATGTGGAAAACCGTTACGGTGATGGCCAGCAGACGCCGTTCATCGACGCGTGGGTCAA CCAGTACGGGCTCAAGGAATGGACCCGGCAACTGCTGCAGGTCACGGTGCCGCCGATCATTCACATGCTCTATGCCGAAG GCATCGGCATGGAGTCCCACGGCCAGAACATCGTGCTGATCGTCAAGCAGGGCTGGCCGCAGCGTATCGCCCTCAAGGAC TTCCATGACGGCGTGCGTTATTCACCGGCGCATCTCGGGCGTCCCGAACTGTGCCCGGAACTGGTGCCGCTGCCCGCCAG CCATGCAAAGCTCAACCGCAACTCGTTCATCATCACCGACGACGTCAACGCGGTGCGCGACTTCTCCTGTGATTGTTTCT TCTTCATCTGTCTGGCCGAAATGGCGATTTTCCTGCGCCAGCAGTACCAGCTGGACGAGGCACTGTTCTGGCAGATGACC GCCGACGTCATTCTCGACTATCAGCGTGCTCACCCGCAGCATCGCGACCGTTTCGGGCTGTTTGACGTGTTTGCGCCATC GTACGAAGTGGAAGAACTGACCAAGCGCCGCCTGCTGGGTGATGGCGAGCGTCGCTTCCGCTCGGTACCTAACCCACTGC AAACATACAGGCCGCAATGA
Upstream 100 bases:
>100_bases GGCACTGCCGTGTGCCTGGCGTTTTCCCCTTAACGACGAGCGCGCCGAGGCCCAGCCCGACGCGGTCGAACCCCGATAAT TTTTCGTTCGAGGTATGAAC
Downstream 100 bases:
>100_bases TGCTGAGGACCAATACGCTCAAAAGCAGGATTGCCGACGGACAGCCGGCACACGGGGTGATCAGTTCGATCCCGGCCCCG GCCGCCATCGAGCTGATCGC
Product: IucA/IucC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 619; Mature: 618
Protein sequence:
>619_residues MATPLPLQRNAASTTTTAGTGAWLADVSAERYQQVQRRVIGQLLQTLLYEAALPYRCEPLDDHRHRFAVAVSGGVEYRCE GLLSTSFELIRLDHATLERVDSAGERSVPDLHLALTELLSPFKDSPHLTRFIQEIEQTQLKDLQARTQGYQPARPAHQLD VDALEQHFMDAHSYHPCYKSRIGFSLADNRHYGPEFATPFAVVWLAVAKSSASVGHSRSMDFQAFIRQELGTQRWQEIAR ELAARGKSIDDYQLMPVHPWQWDNVTVSTFYPELASGELIYLGTSTDSYKAQQSIRTLANASQPQRPYVKLAMSMTNTSS TRILARHTVLNGPIITDWLHQLIATDSTAQALNFVILGEVAGVSFDYRHLPESRSAQTYGTLGAIWRESLHQYLRDDEQA VPFNGLSHVENRYGDGQQTPFIDAWVNQYGLKEWTRQLLQVTVPPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKD FHDGVRYSPAHLGRPELCPELVPLPASHAKLNRNSFIITDDVNAVRDFSCDCFFFICLAEMAIFLRQQYQLDEALFWQMT ADVILDYQRAHPQHRDRFGLFDVFAPSYEVEELTKRRLLGDGERRFRSVPNPLQTYRPQ
Sequences:
>Translated_619_residues MATPLPLQRNAASTTTTAGTGAWLADVSAERYQQVQRRVIGQLLQTLLYEAALPYRCEPLDDHRHRFAVAVSGGVEYRCE GLLSTSFELIRLDHATLERVDSAGERSVPDLHLALTELLSPFKDSPHLTRFIQEIEQTQLKDLQARTQGYQPARPAHQLD VDALEQHFMDAHSYHPCYKSRIGFSLADNRHYGPEFATPFAVVWLAVAKSSASVGHSRSMDFQAFIRQELGTQRWQEIAR ELAARGKSIDDYQLMPVHPWQWDNVTVSTFYPELASGELIYLGTSTDSYKAQQSIRTLANASQPQRPYVKLAMSMTNTSS TRILARHTVLNGPIITDWLHQLIATDSTAQALNFVILGEVAGVSFDYRHLPESRSAQTYGTLGAIWRESLHQYLRDDEQA VPFNGLSHVENRYGDGQQTPFIDAWVNQYGLKEWTRQLLQVTVPPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKD FHDGVRYSPAHLGRPELCPELVPLPASHAKLNRNSFIITDDVNAVRDFSCDCFFFICLAEMAIFLRQQYQLDEALFWQMT ADVILDYQRAHPQHRDRFGLFDVFAPSYEVEELTKRRLLGDGERRFRSVPNPLQTYRPQ >Mature_618_residues ATPLPLQRNAASTTTTAGTGAWLADVSAERYQQVQRRVIGQLLQTLLYEAALPYRCEPLDDHRHRFAVAVSGGVEYRCEG LLSTSFELIRLDHATLERVDSAGERSVPDLHLALTELLSPFKDSPHLTRFIQEIEQTQLKDLQARTQGYQPARPAHQLDV DALEQHFMDAHSYHPCYKSRIGFSLADNRHYGPEFATPFAVVWLAVAKSSASVGHSRSMDFQAFIRQELGTQRWQEIARE LAARGKSIDDYQLMPVHPWQWDNVTVSTFYPELASGELIYLGTSTDSYKAQQSIRTLANASQPQRPYVKLAMSMTNTSST RILARHTVLNGPIITDWLHQLIATDSTAQALNFVILGEVAGVSFDYRHLPESRSAQTYGTLGAIWRESLHQYLRDDEQAV PFNGLSHVENRYGDGQQTPFIDAWVNQYGLKEWTRQLLQVTVPPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKDF HDGVRYSPAHLGRPELCPELVPLPASHAKLNRNSFIITDDVNAVRDFSCDCFFFICLAEMAIFLRQQYQLDEALFWQMTA DVILDYQRAHPQHRDRFGLFDVFAPSYEVEELTKRRLLGDGERRFRSVPNPLQTYRPQ
Specific function: Unknown
COG id: COG4264
COG function: function code Q; Siderophore synthetase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iucC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007310 - InterPro: IPR022770 [H]
Pfam domain/function: PF06276 FhuF; PF04183 IucA_IucC [H]
EC number: NA
Molecular weight: Translated: 70438; Mature: 70307
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPLPLQRNAASTTTTAGTGAWLADVSAERYQQVQRRVIGQLLQTLLYEAALPYRCEPL CCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DDHRHRFAVAVSGGVEYRCEGLLSTSFELIRLDHATLERVDSAGERSVPDLHLALTELLS CCCCCEEEEEEECCCCEEEHHHHHCCCHHEEECHHHHHHHHCCCCCCCCHHHHHHHHHHH PFKDSPHLTRFIQEIEQTQLKDLQARTQGYQPARPAHQLDVDALEQHFMDAHSYHPCYKS HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHCCCCHHHH RIGFSLADNRHYGPEFATPFAVVWLAVAKSSASVGHSRSMDFQAFIRQELGTQRWQEIAR HCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHH ELAARGKSIDDYQLMPVHPWQWDNVTVSTFYPELASGELIYLGTSTDSYKAQQSIRTLAN HHHHCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHC ASQPQRPYVKLAMSMTNTSSTRILARHTVLNGPIITDWLHQLIATDSTAQALNFVILGEV CCCCCCCHHHHEEHHCCCCCCEEEEHHHHCCCCHHHHHHHHHHCCCCHHHHHHEEEEEHH AGVSFDYRHLPESRSAQTYGTLGAIWRESLHQYLRDDEQAVPFNGLSHVENRYGDGQQTP HCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCC FIDAWVNQYGLKEWTRQLLQVTVPPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKD HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHH FHDGVRYSPAHLGRPELCPELVPLPASHAKLNRNSFIITDDVNAVRDFSCDCFFFICLAE HCCCCCCCCCCCCCHHCCHHHCCCCCHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHH MAIFLRQQYQLDEALFWQMTADVILDYQRAHPQHRDRFGLFDVFAPSYEVEELTKRRLLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCCCHHHHHHHHHCC DGERRFRSVPNPLQTYRPQ CCHHHHHCCCCHHHHCCCC >Mature Secondary Structure ATPLPLQRNAASTTTTAGTGAWLADVSAERYQQVQRRVIGQLLQTLLYEAALPYRCEPL CCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DDHRHRFAVAVSGGVEYRCEGLLSTSFELIRLDHATLERVDSAGERSVPDLHLALTELLS CCCCCEEEEEEECCCCEEEHHHHHCCCHHEEECHHHHHHHHCCCCCCCCHHHHHHHHHHH PFKDSPHLTRFIQEIEQTQLKDLQARTQGYQPARPAHQLDVDALEQHFMDAHSYHPCYKS HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHCCCCHHHH RIGFSLADNRHYGPEFATPFAVVWLAVAKSSASVGHSRSMDFQAFIRQELGTQRWQEIAR HCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHH ELAARGKSIDDYQLMPVHPWQWDNVTVSTFYPELASGELIYLGTSTDSYKAQQSIRTLAN HHHHCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHC ASQPQRPYVKLAMSMTNTSSTRILARHTVLNGPIITDWLHQLIATDSTAQALNFVILGEV CCCCCCCHHHHEEHHCCCCCCEEEEHHHHCCCCHHHHHHHHHHCCCCHHHHHHEEEEEHH AGVSFDYRHLPESRSAQTYGTLGAIWRESLHQYLRDDEQAVPFNGLSHVENRYGDGQQTP HCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCC FIDAWVNQYGLKEWTRQLLQVTVPPIIHMLYAEGIGMESHGQNIVLIVKQGWPQRIALKD HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHH FHDGVRYSPAHLGRPELCPELVPLPASHAKLNRNSFIITDDVNAVRDFSCDCFFFICLAE HCCCCCCCCCCCCCHHCCHHHCCCCCHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHH MAIFLRQQYQLDEALFWQMTADVILDYQRAHPQHRDRFGLFDVFAPSYEVEELTKRRLLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCCCHHHHHHHHHCC DGERRFRSVPNPLQTYRPQ CCHHHHHCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]