| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yjjL [C]
Identifier: 66045139
GI number: 66045139
Start: 2172227
End: 2173489
Strand: Direct
Name: yjjL [C]
Synonym: Psyr_1898
Alternate gene names: 66045139
Gene position: 2172227-2173489 (Clockwise)
Preceding gene: 66045138
Following gene: 66045141
Centisome position: 35.65
GC content: 59.54
Gene sequence:
>1263_bases ATGAGCAGTTCGGCCCTGGACGGTTCGCAACACCCCCTCAAAAGCAGCTTCTTCCTGCTGTTTCTGACGATCTTCATCCC CTTCGGGCTGGGGCATTTCGTTTCCTACCTGTTTCGTACCGTCAACGCAGTGATCTACGTCGACCTGCAAACCGACCTGA GCTTGCCCGCCAGCAGTCTGGGTTTGCTGACTGGTGTGTACTTTCTGACCTTCGCCGCCGCACAGATTCCGCTTGGCGTG ATGCTGGACCGCTATGGGCCGCGCAGCGTTCAGGCGCCGATGCTGCTGTTCGCGGTCGCCGGCTCGGTCATCTTCAGTAT TTCCAGCACCGAGACAGGGTTGTTGATCGGGCGAGGGCTGATTGGCCTGGGGGTAGCGGGCTCGCTGATGAGTGCGATCA AAGCGTGTGCCATCTGGTTGCCGGTCGAGCGTTTGCCGCTGAGTACCGCCTGCCTGCTGTCGATTGGCGGGCTGGGGGCG ATGGCGTCAACCACGCCATTACATGCGCTGCTGAGCTGGTTGACCTGGCGAGAGGCGTTTCTGGTTCTGGCGCTGCTGAC CTTGTGTGTGGCGGTGGTGATACACCTTAGCGTTCCCAAAGCCTACGAGAGCAAAAAAACTCGCTACAGCGATATGTTTG CCGCGGTCGGCAAGCTGTACGCGTCGTGGACATTCTGGCGTCTGGCGTTGTATTCGGTGTTCGCGCATGCCATCTACATG TCGGTGCTGTCATTGTGGATGGGGCCGTGGTTGCGCGATATGGCCGGCCTGAGTGATTCCGCTATGGCCAATGTGCTGTT GTTCGGAGCCATCGCGATGGTGGCAGGGGCTCTGACGTTCGGCGCGATCACCGACTACCTGCGCAGGTTCGGCGTACAGC CGATCATGATCTGTGGCACCGGTATGCTGATCTTTATCGGCTTTCAGGTGCTGATGGCCAGCGGCTTGCCGGTATCGCCT TACCTGATTGCCATGGGCTTCAGCTTCTTTGGCACCTCGACGACCATGAACTACGCCATCGTGGCGCAATCGGTGTCGCC GGAGCTGGCGGGCAGGGTCAGTTCCTCGTTCAATCTGGTGGTGTTCGTGCTGGCGTTTTTCCTGCAGTGGCTGATGGGAG CAGTACTTAATCTGTGGCCAGCGCCCCAGGGTGCCGGTCACCCGCTTGAGGCTTATCAGTGGTCGTTGGGCCTCATGATT ACGCTGCAATTGCCTGGCGTGCTGCTCTGGCTCAGCTTTCGGCCCTGGAAACGCAAGGTCTGA
Upstream 100 bases:
>100_bases CGGGCCGAACCCTGCGCAGGCAGGCTTCGGCCCGTTTTGTTTTGTGGCTGACCATGAGAATCTGTCACGCGCAGATTTTC TGGACGATGGAGTATCAAGG
Downstream 100 bases:
>100_bases AAACGCAAAACCCCGGCCGAGAGACTCTCGAGCCGGGGTTTTCTTGTTGCAATGCCGCGATCGATCAGCTGGCGGAAGCC GCGACAGGCGCTTCAAGCTT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Facilitator Family Transporter; Transporter MFS Superfamily; Sugar Phosphate Permease; Transporter Facilitator Family; Sugar Transport Family Protein; Carbohydrate Transport Membrane Protein; Intraphagosomal Amino Acid Transporter Family Protein; MFS Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MSSSALDGSQHPLKSSFFLLFLTIFIPFGLGHFVSYLFRTVNAVIYVDLQTDLSLPASSLGLLTGVYFLTFAAAQIPLGV MLDRYGPRSVQAPMLLFAVAGSVIFSISSTETGLLIGRGLIGLGVAGSLMSAIKACAIWLPVERLPLSTACLLSIGGLGA MASTTPLHALLSWLTWREAFLVLALLTLCVAVVIHLSVPKAYESKKTRYSDMFAAVGKLYASWTFWRLALYSVFAHAIYM SVLSLWMGPWLRDMAGLSDSAMANVLLFGAIAMVAGALTFGAITDYLRRFGVQPIMICGTGMLIFIGFQVLMASGLPVSP YLIAMGFSFFGTSTTMNYAIVAQSVSPELAGRVSSSFNLVVFVLAFFLQWLMGAVLNLWPAPQGAGHPLEAYQWSLGLMI TLQLPGVLLWLSFRPWKRKV
Sequences:
>Translated_420_residues MSSSALDGSQHPLKSSFFLLFLTIFIPFGLGHFVSYLFRTVNAVIYVDLQTDLSLPASSLGLLTGVYFLTFAAAQIPLGV MLDRYGPRSVQAPMLLFAVAGSVIFSISSTETGLLIGRGLIGLGVAGSLMSAIKACAIWLPVERLPLSTACLLSIGGLGA MASTTPLHALLSWLTWREAFLVLALLTLCVAVVIHLSVPKAYESKKTRYSDMFAAVGKLYASWTFWRLALYSVFAHAIYM SVLSLWMGPWLRDMAGLSDSAMANVLLFGAIAMVAGALTFGAITDYLRRFGVQPIMICGTGMLIFIGFQVLMASGLPVSP YLIAMGFSFFGTSTTMNYAIVAQSVSPELAGRVSSSFNLVVFVLAFFLQWLMGAVLNLWPAPQGAGHPLEAYQWSLGLMI TLQLPGVLLWLSFRPWKRKV >Mature_419_residues SSSALDGSQHPLKSSFFLLFLTIFIPFGLGHFVSYLFRTVNAVIYVDLQTDLSLPASSLGLLTGVYFLTFAAAQIPLGVM LDRYGPRSVQAPMLLFAVAGSVIFSISSTETGLLIGRGLIGLGVAGSLMSAIKACAIWLPVERLPLSTACLLSIGGLGAM ASTTPLHALLSWLTWREAFLVLALLTLCVAVVIHLSVPKAYESKKTRYSDMFAAVGKLYASWTFWRLALYSVFAHAIYMS VLSLWMGPWLRDMAGLSDSAMANVLLFGAIAMVAGALTFGAITDYLRRFGVQPIMICGTGMLIFIGFQVLMASGLPVSPY LIAMGFSFFGTSTTMNYAIVAQSVSPELAGRVSSSFNLVVFVLAFFLQWLMGAVLNLWPAPQGAGHPLEAYQWSLGLMIT LQLPGVLLWLSFRPWKRKV
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367379, Length=373, Percent_Identity=24.6648793565684, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45437; Mature: 45305
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSALDGSQHPLKSSFFLLFLTIFIPFGLGHFVSYLFRTVNAVIYVDLQTDLSLPASSL CCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCEEEEEEEECCCCCCHHHH GLLTGVYFLTFAAAQIPLGVMLDRYGPRSVQAPMLLFAVAGSVIFSISSTETGLLIGRGL HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCEEECCH IGLGVAGSLMSAIKACAIWLPVERLPLSTACLLSIGGLGAMASTTPLHALLSWLTWREAF HHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH LVLALLTLCVAVVIHLSVPKAYESKKTRYSDMFAAVGKLYASWTFWRLALYSVFAHAIYM HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVLSLWMGPWLRDMAGLSDSAMANVLLFGAIAMVAGALTFGAITDYLRRFGVQPIMICGT HHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC GMLIFIGFQVLMASGLPVSPYLIAMGFSFFGTSTTMNYAIVAQSVSPELAGRVSSSFNLV HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHCCCCHHH VFVLAFFLQWLMGAVLNLWPAPQGAGHPLEAYQWSLGLMITLQLPGVLLWLSFRPWKRKV HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEEECCCEEEEEECCCCCCCC >Mature Secondary Structure SSSALDGSQHPLKSSFFLLFLTIFIPFGLGHFVSYLFRTVNAVIYVDLQTDLSLPASSL CCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCEEEEEEEECCCCCCHHHH GLLTGVYFLTFAAAQIPLGVMLDRYGPRSVQAPMLLFAVAGSVIFSISSTETGLLIGRGL HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCEEECCH IGLGVAGSLMSAIKACAIWLPVERLPLSTACLLSIGGLGAMASTTPLHALLSWLTWREAF HHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH LVLALLTLCVAVVIHLSVPKAYESKKTRYSDMFAAVGKLYASWTFWRLALYSVFAHAIYM HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVLSLWMGPWLRDMAGLSDSAMANVLLFGAIAMVAGALTFGAITDYLRRFGVQPIMICGT HHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC GMLIFIGFQVLMASGLPVSPYLIAMGFSFFGTSTTMNYAIVAQSVSPELAGRVSSSFNLV HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHCCCCHHH VFVLAFFLQWLMGAVLNLWPAPQGAGHPLEAYQWSLGLMITLQLPGVLLWLSFRPWKRKV HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEEECCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA