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The map label for this gene is xerC [H]

Identifier: 66044722

GI number: 66044722

Start: 1663795

End: 1664757

Strand: Direct

Name: xerC [H]

Synonym: Psyr_1475

Alternate gene names: 66044722

Gene position: 1663795-1664757 (Clockwise)

Preceding gene: 66044718

Following gene: 66044726

Centisome position: 27.3

GC content: 58.67

Gene sequence:

>963_bases
ATGCAGGAACTGACGAAAAACCATACGAATGATCAGCGTCGGCTCACGGCGGTCGAATTTCAGACGCTGGCCAAGGTTCC
AGCCGCGGTCGAGTGGTTTGCCAACCTGGACAACCCTCGAACACGACGTGCTTACCAAAACGACCTGGAAGACTTCTGTA
GTTTTATCGGCTTGGCTTCGGCCGATGAATTTCGGGTCGTGACCCGATCGCATGTTTTAGCCTGGCGAGCCCACCTCGAG
CATCGCGGTTTGGCCGGAGCCACGATCCGGCGCAAATTGGCCGCGCTGGCCAGCCTCTTTGATCACCTCCTGGAGAACAA
TGCGATCGCCGGCGGCAATCCAGTGCATGGGGTAAAACGTCCCAGGATAGAAAGCAATGAAGGCAAGACGCCGGCGTTGG
GTGACCACCAGGCGAAGGCGCTGCTCGAGGCGCCGGATGAAACAACACTTAAAGGGCAGCGCGACCGGGCGCTATTGGCT
GTTCTTCTCTATCACGGACTGCGCCGTGAAGAAGCGGCGCTGCTGCAGGTGAGCGACATTCAGGAGCGCCGCGGTATTCA
GCATCTGAAGGTTCACGGCAAGGGCGGCAAGGTGCGATACCTCCCGTTGCACCCGATCGCAGCCGGGCGTATTCATCAGT
ACCTGGAAAACTCAGAGCATCATCTGGCCGAACGGAAGGTGCCACTGTTCATGCCGCTGCGAGGTAAATTGACCGGCGCC
GGTATCACGGCAAACGGCATCTATGCCGTCGTCACGGCCTACGCGAAAAAGGCCGGGATTGAGGTCGACGGCCTTGGGGT
TCATGGACTCCGAGCAACGGCAGCCACCAACGCCTTGGAGCATGAAGCCGATATCGCCAAGGTCCAGGCCTGGCTGGGTC
ATGCCAACATCAGCACGACCAAGATCTACGATCGGCGGGAGAACCGGCCGGAGGATTCACCCACCTATAAAGTGAAGTAT
TAA

Upstream 100 bases:

>100_bases
TTGCCGTTTATCGGTTTTAGCAACGGCGGACTGATATAGCGATGATTTTGTGACCGAAAGCTTTGAGAGCGATTGCAGGA
TAGCCAATGATGAGAACGAT

Downstream 100 bases:

>100_bases
TTGAAGTGATCGAGGCCTAAGCGGCAGCTCACCCACGCGCACTGCCAAGGATGTGGTGCAACGCTGCCCATGGATGATGA
CCTTCCACATCGCTGGCTGG

Product: Phage integrase:Phage integrase, N-terminal SAM-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MQELTKNHTNDQRRLTAVEFQTLAKVPAAVEWFANLDNPRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLE
HRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLA
VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGA
GITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTYKVKY

Sequences:

>Translated_320_residues
MQELTKNHTNDQRRLTAVEFQTLAKVPAAVEWFANLDNPRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLE
HRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLA
VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGA
GITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTYKVKY
>Mature_320_residues
MQELTKNHTNDQRRLTAVEFQTLAKVPAAVEWFANLDNPRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLE
HRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLA
VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGA
GITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTYKVKY

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=266, Percent_Identity=29.6992481203008, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=30.0341296928328, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35534; Mature: 35534

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQELTKNHTNDQRRLTAVEFQTLAKVPAAVEWFANLDNPRTRRAYQNDLEDFCSFIGLAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ADEFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKR
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDI
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
QERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGA
HHHCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHCCCCEEECCCCCEECC
GITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTT
CEECCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KIYDRRENRPEDSPTYKVKY
EEEHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MQELTKNHTNDQRRLTAVEFQTLAKVPAAVEWFANLDNPRTRRAYQNDLEDFCSFIGLAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
ADEFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKR
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDI
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
QERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGA
HHHCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHCCCCEEECCCCCEECC
GITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTT
CEECCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KIYDRRENRPEDSPTYKVKY
EEEHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA