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The map label for this gene is yebA [H]

Identifier: 66044506

GI number: 66044506

Start: 1415130

End: 1415954

Strand: Reverse

Name: yebA [H]

Synonym: Psyr_1258

Alternate gene names: 66044506

Gene position: 1415954-1415130 (Counterclockwise)

Preceding gene: 66044507

Following gene: 66044505

Centisome position: 23.24

GC content: 61.7

Gene sequence:

>825_bases
ATGCTACGTTTTATCGCCCCGCTGTTCGCCCTGCTGCTCTGTCTGCCCGCCCACGCCGACAGCTTTATTACCCGCGCACT
CGACAAACCGGTGCCAGGCGGCGTGGCGGTTGTCGATCTGGGCACAGGCGCCCAGGCACCGACCGCCACCTATCAAGGCA
AACCGGTGCTGGTGGTCAAGGAACAGGGCACGCGCTGGCTGGCCATCGTCGGCATTCCTTTGACCGTCAAACCCGGCACC
CAGCAGGTCACCTCCGGCGGGCGCACGCTCAACTTCACCGTTGGCATCAAGAAATACCCGGAACAGCACATCACGCTCAA
GAACAAACGTCAGGTCAATCCCAGCCCTGAAGACAACAAACGCATTGAGGGCGAACTGGCCGAGCAACTGCGCGCCTACC
GCAGTTTCAGCCCAGGCACGCCAAGCAACCTGATTCTGGACAAGCCGGTCAATGGCCCGTTGTCGAGCAAGTTCGGCGTG
CGTCGCTTCTTCAATGGCGAAGAGCGCAACCCGCATTCGGGCCTCGACTTCGCGGTGCCGGCCGGCACGCCGATCAAATC
CCCGGCAGCGGGCAAGGTCATCCTGACCGGCAATTACTTCTTCAATGGCAACACGGTATTCGTCGATCACGGGCAAGGCT
TCATCAGCATGTTTTGCCATATGTCGAAGATCGACGTGAAGGTCGGCGACCTCGTCCCGCGTGGCGGAGTGGTCGGCAAA
GTCGGCGCCACAGGTCGCGCAACCGGGCCGCACATGCACTGGAACGTCAGCCTCAACGATGCACGCGTGGACCCGGCGAT
CTTCATCGGCGCGTTTCAGCCGTAA

Upstream 100 bases:

>100_bases
CAACGGCTTACCGCCAGGCTCGGCGAAGGCGAACTGCACGTGCGTGTCGAAGACAATCACCTCACACCCGTGACCCTCTC
CCTTCTGGACTGACTGCCTG

Downstream 100 bases:

>100_bases
GCCTGTTGGTGAGCGAGCGCTACGGCGCTCGCTCACACGCCCCCTCACTTGCGCACATCGCTTTCGAACAACAATAACCC
GCACATAACGCTTCAGATAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MLRFIAPLFALLLCLPAHADSFITRALDKPVPGGVAVVDLGTGAQAPTATYQGKPVLVVKEQGTRWLAIVGIPLTVKPGT
QQVTSGGRTLNFTVGIKKYPEQHITLKNKRQVNPSPEDNKRIEGELAEQLRAYRSFSPGTPSNLILDKPVNGPLSSKFGV
RRFFNGEERNPHSGLDFAVPAGTPIKSPAAGKVILTGNYFFNGNTVFVDHGQGFISMFCHMSKIDVKVGDLVPRGGVVGK
VGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP

Sequences:

>Translated_274_residues
MLRFIAPLFALLLCLPAHADSFITRALDKPVPGGVAVVDLGTGAQAPTATYQGKPVLVVKEQGTRWLAIVGIPLTVKPGT
QQVTSGGRTLNFTVGIKKYPEQHITLKNKRQVNPSPEDNKRIEGELAEQLRAYRSFSPGTPSNLILDKPVNGPLSSKFGV
RRFFNGEERNPHSGLDFAVPAGTPIKSPAAGKVILTGNYFFNGNTVFVDHGQGFISMFCHMSKIDVKVGDLVPRGGVVGK
VGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP
>Mature_274_residues
MLRFIAPLFALLLCLPAHADSFITRALDKPVPGGVAVVDLGTGAQAPTATYQGKPVLVVKEQGTRWLAIVGIPLTVKPGT
QQVTSGGRTLNFTVGIKKYPEQHITLKNKRQVNPSPEDNKRIEGELAEQLRAYRSFSPGTPSNLILDKPVNGPLSSKFGV
RRFFNGEERNPHSGLDFAVPAGTPIKSPAAGKVILTGNYFFNGNTVFVDHGQGFISMFCHMSKIDVKVGDLVPRGGVVGK
VGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=120, Percent_Identity=36.6666666666667, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 29387; Mature: 29387

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFIAPLFALLLCLPAHADSFITRALDKPVPGGVAVVDLGTGAQAPTATYQGKPVLVVK
CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCCEEEEEC
EQGTRWLAIVGIPLTVKPGTQQVTSGGRTLNFTVGIKKYPEQHITLKNKRQVNPSPEDNK
CCCCEEEEEEEEEEEECCCCHHHHCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCC
RIEGELAEQLRAYRSFSPGTPSNLILDKPVNGPLSSKFGVRRFFNGEERNPHSGLDFAVP
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEC
AGTPIKSPAAGKVILTGNYFFNGNTVFVDHGQGFISMFCHMSKIDVKVGDLVPRGGVVGK
CCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHCEEEECCCCCCCCEEEC
VGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP
CCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC
>Mature Secondary Structure
MLRFIAPLFALLLCLPAHADSFITRALDKPVPGGVAVVDLGTGAQAPTATYQGKPVLVVK
CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCCEEEEEC
EQGTRWLAIVGIPLTVKPGTQQVTSGGRTLNFTVGIKKYPEQHITLKNKRQVNPSPEDNK
CCCCEEEEEEEEEEEECCCCHHHHCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCC
RIEGELAEQLRAYRSFSPGTPSNLILDKPVNGPLSSKFGVRRFFNGEERNPHSGLDFAVP
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEC
AGTPIKSPAAGKVILTGNYFFNGNTVFVDHGQGFISMFCHMSKIDVKVGDLVPRGGVVGK
CCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHCEEEECCCCCCCCEEEC
VGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP
CCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]