Click here to switch to the map view.

The map label for this gene is hrpJ [H]

Identifier: 66044467

GI number: 66044467

Start: 1373498

End: 1374679

Strand: Reverse

Name: hrpJ [H]

Synonym: Psyr_1216

Alternate gene names: 66044467

Gene position: 1374679-1373498 (Counterclockwise)

Preceding gene: 66044472

Following gene: 66044466

Centisome position: 22.56

GC content: 60.58

Gene sequence:

>1182_bases
ATGAGCCTTCGCCACCAGGGAACCGAACCGGGTCGACGACCCACTCAGCGGTCACACCAGGCCCAGAATCGTCCTATGAA
AATTGTCGCCCCGCCTACATTGCCCATTCGTCCGGTAGCGCCAATCCGCGCCATCACGCCGGCTGCGCGAGCGATTCCCG
GCGGCGGGTTGCCTGATGAAAAAGGCACCTCGTCACTGCAGGTTTCGCGCTTCGCCGCAGCACTGGTGCAGCACAGCCGG
ATCCTGCGTGAGCGAGAACTGATCGCGAGCAGGAACGCGCTGCAGTCGCGGGCCGTCAAGCTGGGCGAGCTTTATCAGTT
GCTGATGAGCGCCAGCGACACCGGGCTGGATAACGCCGCCAGACTGCTGCGCAAAAAACTGCTGCAGGACAACGACGCCG
ATCTGGAACAGGTTCTGGAATTCGCTGACGGCGACGCTGCCAAGGCTCACGTGGTGTTGCAGGCGGCACGTAAACAGGCA
GAAGACGATGGGGCGGAAGCAGAATATGTAGCGCTGACCCAGACGCTTAAACATCTGCGCCGCCAATTCGGCCCGCGTAC
CCGCGCCGGAATCAATACCGCAAGAGCCTTCGGGCGCCAGAACATCGATAACAAGCGCCGCACTGCCTTACGCAATCTGT
ATGGCGTAGCGGTTTCCGGACAACCCAATGTCACGGGCTTGATCGAAGCCTTGATTGGCGAGCAACAGGAACCCGGCGAG
TTCGACCTGAACCTGCGCGACATGCGCATCGCCATCGCCGACGATCTTTCGGCGATTACCCCGTCGGCTTCCCATGAACA
ACTGCGCACGCTGATGCATGGCCTGACCACCGCGCGCCATGTCACTACGTTGCTGCGCGGCTGCGAACATCTGCTGGGGC
GCATGCGCAAAAAGAATCCCAAACTGACGGTGGACCCGCCGGCCTTCCTCAAACACATGCTGACCCTGACGGCCAATGGC
ATGAATGTTAATCAGACCTTGCAACTGACCCAGCACATCGGGGGCAACAGGCTCGAACACCAGCTGGCCTTTCTCAATGG
CCTGCGGCCGATGCTGATGCAGTTGCCGATCCTGCTCTGGCGGGACCTGAAAAGCCGCCAGGCCGCGCTGAATAATCTAC
TCACGCTGATGGCCGAGCTTACGCAGAAGGAACAGAAGCAACTATACGAGGGGCTTGCCTGA

Upstream 100 bases:

>100_bases
AACCACATGATTTGTATAAATATTTTAAAATATGAAATTCTTTGTAATACATTTTTTTGCGCAACACGATTTTTAGCTCT
GCAGCTTTTGGCACAAACGC

Downstream 100 bases:

>100_bases
TGAACCGGGTCATCAACTTTCTGAACATGGTCGCGCTGTCGGCCATGCGCCGCTCGGAACTGGTCGGTGCGTTTTTTGTG
ATCGCCATCGTGTTCATGAT

Product: type III secretion protein HrpJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSLRHQGTEPGRRPTQRSHQAQNRPMKIVAPPTLPIRPVAPIRAITPAARAIPGGGLPDEKGTSSLQVSRFAAALVQHSR
ILRERELIASRNALQSRAVKLGELYQLLMSASDTGLDNAARLLRKKLLQDNDADLEQVLEFADGDAAKAHVVLQAARKQA
EDDGAEAEYVALTQTLKHLRRQFGPRTRAGINTARAFGRQNIDNKRRTALRNLYGVAVSGQPNVTGLIEALIGEQQEPGE
FDLNLRDMRIAIADDLSAITPSASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRMRKKNPKLTVDPPAFLKHMLTLTANG
MNVNQTLQLTQHIGGNRLEHQLAFLNGLRPMLMQLPILLWRDLKSRQAALNNLLTLMAELTQKEQKQLYEGLA

Sequences:

>Translated_393_residues
MSLRHQGTEPGRRPTQRSHQAQNRPMKIVAPPTLPIRPVAPIRAITPAARAIPGGGLPDEKGTSSLQVSRFAAALVQHSR
ILRERELIASRNALQSRAVKLGELYQLLMSASDTGLDNAARLLRKKLLQDNDADLEQVLEFADGDAAKAHVVLQAARKQA
EDDGAEAEYVALTQTLKHLRRQFGPRTRAGINTARAFGRQNIDNKRRTALRNLYGVAVSGQPNVTGLIEALIGEQQEPGE
FDLNLRDMRIAIADDLSAITPSASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRMRKKNPKLTVDPPAFLKHMLTLTANG
MNVNQTLQLTQHIGGNRLEHQLAFLNGLRPMLMQLPILLWRDLKSRQAALNNLLTLMAELTQKEQKQLYEGLA
>Mature_392_residues
SLRHQGTEPGRRPTQRSHQAQNRPMKIVAPPTLPIRPVAPIRAITPAARAIPGGGLPDEKGTSSLQVSRFAAALVQHSRI
LRERELIASRNALQSRAVKLGELYQLLMSASDTGLDNAARLLRKKLLQDNDADLEQVLEFADGDAAKAHVVLQAARKQAE
DDGAEAEYVALTQTLKHLRRQFGPRTRAGINTARAFGRQNIDNKRRTALRNLYGVAVSGQPNVTGLIEALIGEQQEPGEF
DLNLRDMRIAIADDLSAITPSASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRMRKKNPKLTVDPPAFLKHMLTLTANGM
NVNQTLQLTQHIGGNRLEHQLAFLNGLRPMLMQLPILLWRDLKSRQAALNNLLTLMAELTQKEQKQLYEGLA

Specific function: Involved in the secretion of a proteinaceous elicitor of the hypersensitivity response in plants. Also required for pathogenicity on host plant [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hrpJ/yopN family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010812
- InterPro:   IPR013401
- InterPro:   IPR013351 [H]

Pfam domain/function: PF07201 HrpJ [H]

EC number: NA

Molecular weight: Translated: 43522; Mature: 43391

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRHQGTEPGRRPTQRSHQAQNRPMKIVAPPTLPIRPVAPIRAITPAARAIPGGGLPDE
CCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCHHHHCCCCCCCCCC
KGTSSLQVSRFAAALVQHSRILRERELIASRNALQSRAVKLGELYQLLMSASDTGLDNAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLLRKKLLQDNDADLEQVLEFADGDAAKAHVVLQAARKQAEDDGAEAEYVALTQTLKHLR
HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RQFGPRTRAGINTARAFGRQNIDNKRRTALRNLYGVAVSGQPNVTGLIEALIGEQQEPGE
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCC
FDLNLRDMRIAIADDLSAITPSASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRMRKKNP
CCCCHHHHEEEHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KLTVDPPAFLKHMLTLTANGMNVNQTLQLTQHIGGNRLEHQLAFLNGLRPMLMQLPILLW
CEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RDLKSRQAALNNLLTLMAELTQKEQKQLYEGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLRHQGTEPGRRPTQRSHQAQNRPMKIVAPPTLPIRPVAPIRAITPAARAIPGGGLPDE
CCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCHHHHCCCCCCCCCC
KGTSSLQVSRFAAALVQHSRILRERELIASRNALQSRAVKLGELYQLLMSASDTGLDNAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLLRKKLLQDNDADLEQVLEFADGDAAKAHVVLQAARKQAEDDGAEAEYVALTQTLKHLR
HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
RQFGPRTRAGINTARAFGRQNIDNKRRTALRNLYGVAVSGQPNVTGLIEALIGEQQEPGE
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCC
FDLNLRDMRIAIADDLSAITPSASHEQLRTLMHGLTTARHVTTLLRGCEHLLGRMRKKNP
CCCCHHHHEEEHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KLTVDPPAFLKHMLTLTANGMNVNQTLQLTQHIGGNRLEHQLAFLNGLRPMLMQLPILLW
CEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RDLKSRQAALNNLLTLMAELTQKEQKQLYEGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8400380 [H]