Click here to switch to the map view.

The map label for this gene is 66044472

Identifier: 66044472

GI number: 66044472

Start: 1382497

End: 1383732

Strand: Reverse

Name: 66044472

Synonym: Psyr_1224

Alternate gene names: NA

Gene position: 1383732-1382497 (Counterclockwise)

Preceding gene: 66044473

Following gene: 66044467

Centisome position: 22.71

GC content: 49.03

Gene sequence:

>1236_bases
ATGAATATCTCAGGTCCGAACAGACGTCAGGGGACTCAGGCAGAGAACACTGAAAGCGCTTCGTCATCATCGGTAACTAA
CCCACCGCTACAGCGTGGCGAGGGCAGACGTCTGCGACGTCAGGATGCGCTGCCAACGGATATCAGATACAACGCCAACC
AGACAGCGACATCACCGCAAAACGCGCGCGCGGCAGGAAGATATGAATCAGGGGCCAGCTCATCCGGCGCGAATGATACT
CCGCAGGCTGAAGGTTCAATGCCTTCGTCGTCCGCCCTTTTACAATTTCGCCTCGCCGGCGGGCGGAACCATTCTGAGCT
GGAAAATTTTCATACTATGATGCTGAACTCACCGAAAGCATCACGGGGAGATGCTATACCTGAGAAGCCCGAAGCAATAC
CTAAGCGCCTACTGGAGAAGATGGAACCGATTAACCTGGCCCAGTTAGCTTTGCGTGATAAGGATCTGCATGAATATGCC
GTAATGGTCTGTAACCAAGTGAAAAAGGGTGAAGGTCCGAACTCCAATATTACGCAAGGAGATATCAAGTTACTGCCGCT
GTTCGCCAAAGCGGAAAATACAAGAAATCCCGGCTTGAATCTGCATACATTCAAAAGTCATAAAGACTGTTACCAGGCGA
TAAAAGAGCAAAACAGGGATATTCAAAAAAACAAGCAATCGCTGAGTATGCGGGTTGTTTACCCCCCATTCAAAAAGATG
CCAGACCACCATATAGCCTTGGATATCCAACTGAGATACGGCCATCGACCGTCGATTGTCGGCTTTGAGTCTGCCCCTGG
GAACATTATAGATGCTGCAGAAAGGGAAATACTTTCAGCATTAGGCAACGTCAAAATCAAAATGGTAGGAAATTTTCTTC
AATACTCGAAAACTGACTGCACCATGTTTGCGCTTAATAACGCCCTGAAAGCTTTTAAACATCACGAAGAATATACCGCC
CGTCTGCACAATGGAGAAAAGCAGGTGCCTATCCCGGCGACCTTCTTGAAACATGCTCAGTCAAAAAGCTTAGTGGAGAA
TCACCCGGAAAAAGATACCACCGTCACTAAAGACCAGGGCGGTCTGCATATGGAAACGCTATTACACAGAAACCGTGCCT
ACCGGGCGCAACGATCTGCCGGTCAGCACGTTACCTCTATTGAAGGTTTCAGAATGCAGGAAATAAAGAGAGCAGGTGAC
TTCCTTGCCGCAAACAGGGTCCGGGCCAAGCCTTGA

Upstream 100 bases:

>100_bases
TATGGCGGGCAAAGTTACTGCATGGCCATTCTGCTCCGCTCGCCTCCTCAACCAGGCTGACGAAAGCCGGTTTAATGCTA
ACCATGGCGGGGACTATTCG

Downstream 100 bases:

>100_bases
CTCACGTCCTCTGAAAAAACGCGCCTTACGGTTGGCGCGTTTTGTCCGAGGACAGGTGTTCGAGAAGAATAAAGGTTGTC
ACCTCAAGAGGCAGGAGGAA

Product: type III effector HopZ3

Products: NA

Alternate protein names: Virulence/Avirulence Effector Protein Homolog

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNISGPNRRQGTQAENTESASSSSVTNPPLQRGEGRRLRRQDALPTDIRYNANQTATSPQNARAAGRYESGASSSGANDT
PQAEGSMPSSSALLQFRLAGGRNHSELENFHTMMLNSPKASRGDAIPEKPEAIPKRLLEKMEPINLAQLALRDKDLHEYA
VMVCNQVKKGEGPNSNITQGDIKLLPLFAKAENTRNPGLNLHTFKSHKDCYQAIKEQNRDIQKNKQSLSMRVVYPPFKKM
PDHHIALDIQLRYGHRPSIVGFESAPGNIIDAAEREILSALGNVKIKMVGNFLQYSKTDCTMFALNNALKAFKHHEEYTA
RLHNGEKQVPIPATFLKHAQSKSLVENHPEKDTTVTKDQGGLHMETLLHRNRAYRAQRSAGQHVTSIEGFRMQEIKRAGD
FLAANRVRAKP

Sequences:

>Translated_411_residues
MNISGPNRRQGTQAENTESASSSSVTNPPLQRGEGRRLRRQDALPTDIRYNANQTATSPQNARAAGRYESGASSSGANDT
PQAEGSMPSSSALLQFRLAGGRNHSELENFHTMMLNSPKASRGDAIPEKPEAIPKRLLEKMEPINLAQLALRDKDLHEYA
VMVCNQVKKGEGPNSNITQGDIKLLPLFAKAENTRNPGLNLHTFKSHKDCYQAIKEQNRDIQKNKQSLSMRVVYPPFKKM
PDHHIALDIQLRYGHRPSIVGFESAPGNIIDAAEREILSALGNVKIKMVGNFLQYSKTDCTMFALNNALKAFKHHEEYTA
RLHNGEKQVPIPATFLKHAQSKSLVENHPEKDTTVTKDQGGLHMETLLHRNRAYRAQRSAGQHVTSIEGFRMQEIKRAGD
FLAANRVRAKP
>Mature_411_residues
MNISGPNRRQGTQAENTESASSSSVTNPPLQRGEGRRLRRQDALPTDIRYNANQTATSPQNARAAGRYESGASSSGANDT
PQAEGSMPSSSALLQFRLAGGRNHSELENFHTMMLNSPKASRGDAIPEKPEAIPKRLLEKMEPINLAQLALRDKDLHEYA
VMVCNQVKKGEGPNSNITQGDIKLLPLFAKAENTRNPGLNLHTFKSHKDCYQAIKEQNRDIQKNKQSLSMRVVYPPFKKM
PDHHIALDIQLRYGHRPSIVGFESAPGNIIDAAEREILSALGNVKIKMVGNFLQYSKTDCTMFALNNALKAFKHHEEYTA
RLHNGEKQVPIPATFLKHAQSKSLVENHPEKDTTVTKDQGGLHMETLLHRNRAYRAQRSAGQHVTSIEGFRMQEIKRAGD
FLAANRVRAKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45737; Mature: 45737

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISGPNRRQGTQAENTESASSSSVTNPPLQRGEGRRLRRQDALPTDIRYNANQTATSPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCEEECCCCCCCCCC
NARAAGRYESGASSSGANDTPQAEGSMPSSSALLQFRLAGGRNHSELENFHTMMLNSPKA
CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
SRGDAIPEKPEAIPKRLLEKMEPINLAQLALRDKDLHEYAVMVCNQVKKGEGPNSNITQG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DIKLLPLFAKAENTRNPGLNLHTFKSHKDCYQAIKEQNRDIQKNKQSLSMRVVYPPFKKM
CEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHCEEEEECCCHHHC
PDHHIALDIQLRYGHRPSIVGFESAPGNIIDAAEREILSALGNVKIKMVGNFLQYSKTDC
CCCEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCH
TMFALNNALKAFKHHEEYTARLHNGEKQVPIPATFLKHAQSKSLVENHPEKDTTVTKDQG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCC
GLHMETLLHRNRAYRAQRSAGQHVTSIEGFRMQEIKRAGDFLAANRVRAKP
CCHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNISGPNRRQGTQAENTESASSSSVTNPPLQRGEGRRLRRQDALPTDIRYNANQTATSPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCEEECCCCCCCCCC
NARAAGRYESGASSSGANDTPQAEGSMPSSSALLQFRLAGGRNHSELENFHTMMLNSPKA
CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC
SRGDAIPEKPEAIPKRLLEKMEPINLAQLALRDKDLHEYAVMVCNQVKKGEGPNSNITQG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DIKLLPLFAKAENTRNPGLNLHTFKSHKDCYQAIKEQNRDIQKNKQSLSMRVVYPPFKKM
CEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHCEEEEECCCHHHC
PDHHIALDIQLRYGHRPSIVGFESAPGNIIDAAEREILSALGNVKIKMVGNFLQYSKTDC
CCCEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCH
TMFALNNALKAFKHHEEYTARLHNGEKQVPIPATFLKHAQSKSLVENHPEKDTTVTKDQG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCC
GLHMETLLHRNRAYRAQRSAGQHVTSIEGFRMQEIKRAGDFLAANRVRAKP
CCHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA