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The map label for this gene is HrcQb [H]

Identifier: 66044460

GI number: 66044460

Start: 1366928

End: 1367326

Strand: Reverse

Name: HrcQb [H]

Synonym: Psyr_1209

Alternate gene names: 66044460

Gene position: 1367326-1366928 (Counterclockwise)

Preceding gene: 66044461

Following gene: 66044459

Centisome position: 22.44

GC content: 60.9

Gene sequence:

>399_bases
ATGAGTACTGAAGACCTGTATCAGGACGACGTCGAGATGCTCGACGACTATGAAGAACCGGTGCCTGAACAGGCTGATCA
GCAACCGCATGACGACGAACACGCCGAGCAGGCATTCGGGTATGCGGACGAACCGGAGCATGAAAAGCAGTCAGGAGACC
ACCATGAGTCGCCGATGCTCGACTCACTGGAGCTGGACCTGACCTTGCGCTGCGGCGAGCTCAGATTAACCCTTGCCGAA
CTGCGCCGACTGGACGCCGGAACCATTCTCGAAGTCAGCGGCATCGCGCCAGGCCACGCCACGCTGTGCCATGGCGAGCA
GGTGGTTGCCGAAGGCGAACTGGTCGACGTCGAAGGCCGCCTCGGTTTGCAGATTACCCGGCTGGTGGCGCGCTCATGA

Upstream 100 bases:

>100_bases
CAAGGGACCGTGACACTCGCTGGCCGTCAATGGGCGGCCTGCACCGACCAACAGGCACAGCATCTTTTTCTGCAGCTCAG
TCATGAGGAGCACAGTCACC

Downstream 100 bases:

>100_bases
TCATGGAGGGCATCAACCCGATCATGCTGGCGCTGTTTCTCGGCTCGCTGTCGCTGATCCCGTTCCTGTTGATCGTCTGT
ACCGCCTTTCTGAAGATCGC

Product: type III secretion protein HrcQb

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPMLDSLELDLTLRCGELRLTLAE
LRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVARS

Sequences:

>Translated_132_residues
MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPMLDSLELDLTLRCGELRLTLAE
LRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVARS
>Mature_131_residues
STEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPMLDSLELDLTLRCGELRLTLAEL
RRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVARS

Specific function: Component of the type III secretion system, which is required for effector protein delivery, parasitism, and pathogenicity. Probably participates in the formation of a C-ring- like assembly along with HrcQa [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm. Note=Or loosely associated with a membrane component, probably HrcQa (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14688; Mature: 14557

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPML
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCC
DSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGR
CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCEEECCCCEEECCCC
LGLQITRLVARS
CCHHHHHHHHCC
>Mature Secondary Structure 
STEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPML
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCC
DSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGR
CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCEEECCCCEEECCCC
LGLQITRLVARS
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7579617 [H]