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The map label for this gene is hrcQa [H]

Identifier: 66044461

GI number: 66044461

Start: 1367316

End: 1368032

Strand: Reverse

Name: hrcQa [H]

Synonym: Psyr_1210

Alternate gene names: 66044461

Gene position: 1368032-1367316 (Counterclockwise)

Preceding gene: 66044462

Following gene: 66044460

Centisome position: 22.45

GC content: 65.83

Gene sequence:

>717_bases
ATGAGCGCCCTGCGTCTGCGCAAGGTCGACGCCCTGCTGGCCCAAGCCACCCGCGCACTCGGCGCCGGACGGCGCCTGGG
CTTCAGCACCCGCGGTCAACACGCCGAACTGAGCCTGCTGCCGCAGCTCGAAGACGCGCGGATACCGGCAGACGGTGTCT
GGTTGAATACTGCGGTCGGCCCCTTGCTGCTGAGCGATGCCGAAGCGTTGCTCAGCCTGCTGGGCGAAATACCCTTCTCG
CTTGGCGGCGAGCACCAGGCCTGGTACTGGCAGCTATTCAACCAGCGCCTGAGCCCGGTGATTGCCGACCTGCTGGCGCC
TGTTGCGCCGTTTTCCGACGCCCCGACCGAGCCGGCCATCGGCTGCCGGGTTCACGTACGGCTGGGCAGCGAACGACTGG
ATGCCCACCTGCACGCCGCACCCGCCACCCTGCTCAGGCTTCTGGGTTCGGCTGACTGGCAAGTCTTGAAGCGTGACGTG
GACCAATCCTGGTCGGTGGCGACACCGCTGATCGTCGGCGAACTGTCACTGACACTGGAACAAATCGCCGCGCTACGCCC
CGGTGACGTCGTGCTGCCTGCCCGCTGCCGATTCGACAGCGCCGGACAAGGGACCGTGACACTCGCTGGCCGTCAATGGG
CGGCCTGCACCGACCAACAGGCACAGCATCTTTTTCTGCAGCTCAGTCATGAGGAGCACAGTCACCATGAGTACTGA

Upstream 100 bases:

>100_bases
TTCTCAAGCGCTTGCAGGGCCAGGTCGGCGCATGCCGGGACTCGCTGGCGCAGGCACTCGGGCAGGATGTCGAGCTGGAC
ATGCATGAAGACTTCACAGC

Downstream 100 bases:

>100_bases
AGACCTGTATCAGGACGACGTCGAGATGCTCGACGACTATGAAGAACCGGTGCCTGAACAGGCTGATCAGCAACCGCATG
ACGACGAACACGCCGAGCAG

Product: type III secretion protein HrcQa

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVGPLLLSDAEALLSLLGEIPFS
LGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDV
DQSWSVATPLIVGELSLTLEQIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQAQHLFLQLSHEEHSHHEY

Sequences:

>Translated_238_residues
MSALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVGPLLLSDAEALLSLLGEIPFS
LGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDV
DQSWSVATPLIVGELSLTLEQIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQAQHLFLQLSHEEHSHHEY
>Mature_237_residues
SALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVGPLLLSDAEALLSLLGEIPFSL
GGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDVD
QSWSVATPLIVGELSLTLEQIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQAQHLFLQLSHEEHSHHEY

Specific function: Component of the type III secretion system, which is required for effector protein delivery, parasitism, and pathogenicity. Probably participates in the formation of a C-ring- like assembly along with hrcQb [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25882; Mature: 25751

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEHHHHH
PLLLSDAEALLSLLGEIPFSLGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAI
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDVDQSWSVATPLIVGELSLTLE
CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQAQHLFLQLSHEEHSHHEY
HHHHCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHEECCCCCCCCCC
>Mature Secondary Structure 
SALRLRKVDALLAQATRALGAGRRLGFSTRGQHAELSLLPQLEDARIPADGVWLNTAVG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEHHHHH
PLLLSDAEALLSLLGEIPFSLGGEHQAWYWQLFNQRLSPVIADLLAPVAPFSDAPTEPAI
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GCRVHVRLGSERLDAHLHAAPATLLRLLGSADWQVLKRDVDQSWSVATPLIVGELSLTLE
CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QIAALRPGDVVLPARCRFDSAGQGTVTLAGRQWAACTDQQAQHLFLQLSHEEHSHHEY
HHHHCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8075421; 7579617 [H]