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The map label for this gene is sodC1 [H]

Identifier: 66044405

GI number: 66044405

Start: 1305713

End: 1306231

Strand: Direct

Name: sodC1 [H]

Synonym: Psyr_1154

Alternate gene names: 66044405

Gene position: 1305713-1306231 (Clockwise)

Preceding gene: 66044404

Following gene: 66044407

Centisome position: 21.43

GC content: 60.69

Gene sequence:

>519_bases
ATGAAACCTCACCTTTTGCTGGGTCTGCTTGGCGTTTTCTCTTTCGGTGTTCAGGCTGCATCGCTGGACGTTCCGATCAA
TCTGGTCAGCGCTGACGGCGCCCCCAAACCTGTCGGCAGCGTTACGGTAAGCGAAACCCAATACGGCTTGCTGTTCACTC
CGAATCTGAAAGAGCTGCCTGCGGGCATCCACGGTTTTCATGTGCATGAAAACGGCAGTTGCGAAGCGGGTACCAAGGAC
GGCAAGAAGGTCGCAGCCCTCGCGGCTGGCGGGCACTTCGACCCGGCCAAGACCGGCAAGCATCTGGGGCCTTACGCCGA
TGGCCATTTAGGCGATCTGCCTGCGCTGTACGTGGCTGCTGACGGCACCGCGAGTTATCCGGTGCTTGCCCCACGCCTGA
AGAAGCTCTCGGAAATCAAAGGCCATGCGCTGATGGTTCACGCCGGCGGCGACAACCATTCCGACCACCCCGCACCCCTA
GGCGGTGGTGGTGATCGTGCTGCCTGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
GTCACATCCTCTGTGGCATGAAAGACGTTCGTGCTGTGCAGCGTCAGCGCTGCCTGGCGCCACGTTCACTTCGATTATCA
GATCAGGGACGCATTGAATT

Downstream 100 bases:

>100_bases
TGCAGCGTGCCTGCATCCGTTTAGGGTGCAGGCGCGCCAATGGTTAAAGCTTTCTTTATCGCCTGAGTAAGTCGGGCGCT
GCGCCGTGCTCCGTTTGTCT

Product: copper/Zinc superoxide dismutase

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKPHLLLGLLGVFSFGVQAASLDVPINLVSADGAPKPVGSVTVSETQYGLLFTPNLKELPAGIHGFHVHENGSCEAGTKD
GKKVAALAAGGHFDPAKTGKHLGPYADGHLGDLPALYVAADGTASYPVLAPRLKKLSEIKGHALMVHAGGDNHSDHPAPL
GGGGDRAACGVI

Sequences:

>Translated_172_residues
MKPHLLLGLLGVFSFGVQAASLDVPINLVSADGAPKPVGSVTVSETQYGLLFTPNLKELPAGIHGFHVHENGSCEAGTKD
GKKVAALAAGGHFDPAKTGKHLGPYADGHLGDLPALYVAADGTASYPVLAPRLKKLSEIKGHALMVHAGGDNHSDHPAPL
GGGGDRAACGVI
>Mature_172_residues
MKPHLLLGLLGVFSFGVQAASLDVPINLVSADGAPKPVGSVTVSETQYGLLFTPNLKELPAGIHGFHVHENGSCEAGTKD
GKKVAALAAGGHFDPAKTGKHLGPYADGHLGDLPALYVAADGTASYPVLAPRLKKLSEIKGHALMVHAGGDNHSDHPAPL
GGGGDRAACGVI

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=172, Percent_Identity=60.4651162790698, Blast_Score=199, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17433; Mature: 17433

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPHLLLGLLGVFSFGVQAASLDVPINLVSADGAPKPVGSVTVSETQYGLLFTPNLKELP
CCCHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCEEECCCCEEEEECCCHHHHC
AGIHGFHVHENGSCEAGTKDGKKVAALAAGGHFDPAKTGKHLGPYADGHLGDLPALYVAA
CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEE
DGTASYPVLAPRLKKLSEIKGHALMVHAGGDNHSDHPAPLGGGGDRAACGVI
CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCC
>Mature Secondary Structure
MKPHLLLGLLGVFSFGVQAASLDVPINLVSADGAPKPVGSVTVSETQYGLLFTPNLKELP
CCCHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCEEECCCCEEEEECCCHHHHC
AGIHGFHVHENGSCEAGTKDGKKVAALAAGGHFDPAKTGKHLGPYADGHLGDLPALYVAA
CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEE
DGTASYPVLAPRLKKLSEIKGHALMVHAGGDNHSDHPAPLGGGGDRAACGVI
CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]