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The map label for this gene is fimD [H]

Identifier: 66044384

GI number: 66044384

Start: 1283830

End: 1286364

Strand: Direct

Name: fimD [H]

Synonym: Psyr_1133

Alternate gene names: 66044384

Gene position: 1283830-1286364 (Clockwise)

Preceding gene: 66044383

Following gene: 66044385

Centisome position: 21.07

GC content: 62.84

Gene sequence:

>2535_bases
ATGGAATGGCGCAAAGAAGTTAATAAGGGAGTTATTGCCCAGTGCGCGCTCCCTCACCCCCGACGCGGTGCGCTGGGTAT
CGGTTTCGGATTGACGTTGATGTGTGCGGTCAGCGCGTCGGCCGCCTCGTCGGGTGGCGACGGGGCAGTCAGGTTCAATA
CGGCGTTTATCCAGGGAAGCGATCAGCCGGCTGACCTTCAGGAGTTTCTGCGCTCCAATAGTGTATTGCCGGGTATTTAC
CGGGTTGATATCTACGTCAATCGCAAGCTGAGCGGCAGGCGGGATATCCGCTTTTTGAAAAGTCCGCTATCAGGCCTGAT
CGAGCCCTGCCTGTCGCTCGAGATGCTGCAGAGTTTTGGTCTGGACTTGAGCCGTCTGCCGCCAGGTGAGGCATCTGCCC
AGGCCTGTTTCGACCTGCCCGCGCGTGTCGCATTTGCCCGCGTCGACTATCAGCCCGGTGCGTTGCGACTGACGATCAGT
GTGCCGCAAGCGGTGATGTCACGCGGTGCTCGCGGTTATGTGTCGCCGGAGCTTTGGGACCAGGGCGAGACCGCAGGCTT
TATCAACTACAACTTCAATGGCAGCCGGCGGCGTAACAAGGGCCTGGAAACGGAGCAGTACTACGTGGGGCTGCGAAACG
GGCTGAACGTCGGCGCCTGGCGTTTGCGCAACGAGTCCTCTCTGGTCGGCGGCAGTGACAGGCCCTGGCGTTATCGCAGC
AATCGTACCTTCGCGCAGCGTGACATCACCACCCTGAAAAGCCAGCTCACGCTGGGCGAGACGTTCACCGATTCGCAGGT
ATTCGACAGTGTCCGCTTCAGGGGCGCGGCGCTGGCCTCTGACGATGGCATGCTGTCTGACAGCGAGCGGGCCTATGCCC
CGGTCATCCGCGGGATTGCCGAAACCAATGCGACCGTGGAAGTTCGCCAGAACGGCTTTCTGCTCTACAGCGGCAGTGTG
TCGCCCGGGCCGTTCGAGATTGCCGATATCTATCCCAGTGGCTCCAATGGCGACTTGTCGGTGTCTGTCATCGAAGCCGA
CGGGCGTGTAAGAACCTTCACTCAGGCCTACGCGTCGCTGCCGATCATGGTTCCCGCAGGCTCGTTGCGCTACAGCCTGG
CCGGCGGGCAGGTCGACAACAACGACGATCAGCAGGCCTCTCCGGCGTTTGCCAGTGTGGCCCTGATCTACGGTCTTTCC
GAACGGATTACCGGGTTTGCCGGGGTGCAACTGGCCGAGGATTACCAGGCCGCGAACATAGGCACCGGGATCAACACCGG
GCTGGGCGCCGTGTCGATGGACCTTACCCGCTCGGTCAGCAAGGTGGATCAGCGGGCGCGCAGTGGCCAGAGCCTGCGCG
TGCGTTATGCCAATACGCTGGATGTCACCGACACCACGTTGGCAGTGGCCGGTTATCGATATTCGACCGAGCAATACCGG
ACCCTGAGCCAGCACGTCAGCGACAGCGGCGCGCTGCGGCAATTGCGGGCTTCTGGGCTGGCGCGGGATCGGCTGGAACT
CAGCATCACTCAGATAGTGCCTGGCCAGTCGGCGTCGCTGAGCCTGACGGCGTCCGAGCAGCGCTACTGGAACCTGTCCG
GCAAGACCCGGCAGCTTTACCTGTCCTATAACGCGGCCTGGTATTCGCTCAATTACAGCCTGTCCATCGAACGCAACGAG
GATTTCGGGCGAAGCGGTGACGCGAGCACCGACAATCGTGTTGCCCTGAGCGTGACCCTGCCGCTCGGCTCCAGCCCCGG
CTCGTCGCGACTGTCTTTCAACGCGGTGCGCGACAGCCGCGGCGAGTACAACGCGCAGGCCGGGCTCAACGGTCAGGTGC
CGGGCGACCGCGACACGTTCTATTCGGTACAGGCTGGACGTGACAGCAGCTCCGGCAGTTTCGGCGCAGGCAAGGTCAGC
ACCAGCACGGCATTCGGCCGTTTCGAGGCCGGTTATAGCCAGGGCCAGGACTACGATGCATTCAGCCTGTCCGCCGCAGG
GTCGCTGGTGGCGCATGCCGGTGGCGTGAACCTGGGGCAGACCTTGGGAGAAACCTTTGCTCTGGTTCAGGTGCCCGACG
TCGGTGGCGCCCGCTTGAAGTCGTTCAGTAACGTCGAGACCGCCCGCAACGGCTATGCGGTTCTGCCCTATGCGCAGGCC
TACCGCACCAACTGGGTCAGCCTGGATACCCGGCAACTGGGCGCTGATGTCGATCTGGAAAACGCTATTACCCAGATCGT
GCCGCGCAGGGGCGCAATACCGGTGGTGCGCTTCAAGGCCAATGTGGGCCGCCGGGTCCAGTTCGAACTGGTGCGCGTCG
ATGGCAGCAAAGTGCCGCTGGGTGCCAGTGTCGAAGATGAGCAGGGCAGGGCGCTGGCAGTGGTCGATCCCGGCAGTCAG
GCGCTGGTGCTCAGCGAGCAGGATGCCGGCAGCCTGTGGGTGCGCTGGTCAGATCAACGTTGCCAGGCGACATTCTCGTT
ACCGCCCAGAGACCCGTCGCGAGCCTACGAGCGGATCAGGGTGGTATGCCGATGA

Upstream 100 bases:

>100_bases
CAAACCGTCGGGCCTCAGTGACAAGACAGCCCGGCAGACCTGCGTCTGTGTAAAAGGATTGCACGGCGCGCGCGACAGCC
GAAGTAGAGTGAAGACCGCT

Downstream 100 bases:

>100_bases
GCGCTTTCGCTGGCTCATGCAAGGCGCTGTTGACGGCTGTGCTGTTGACGAGCGGCCTGGCGGCGCACGGGGCTGTTTCG
CTGAGCGGAACGCGGCTAAT

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 844; Mature: 844

Protein sequence:

>844_residues
MEWRKEVNKGVIAQCALPHPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGSDQPADLQEFLRSNSVLPGIY
RVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFGLDLSRLPPGEASAQACFDLPARVAFARVDYQPGALRLTIS
VPQAVMSRGARGYVSPELWDQGETAGFINYNFNGSRRRNKGLETEQYYVGLRNGLNVGAWRLRNESSLVGGSDRPWRYRS
NRTFAQRDITTLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIAETNATVEVRQNGFLLYSGSV
SPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASLPIMVPAGSLRYSLAGGQVDNNDDQQASPAFASVALIYGLS
ERITGFAGVQLAEDYQAANIGTGINTGLGAVSMDLTRSVSKVDQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYR
TLSQHVSDSGALRQLRASGLARDRLELSITQIVPGQSASLSLTASEQRYWNLSGKTRQLYLSYNAAWYSLNYSLSIERNE
DFGRSGDASTDNRVALSVTLPLGSSPGSSRLSFNAVRDSRGEYNAQAGLNGQVPGDRDTFYSVQAGRDSSSGSFGAGKVS
TSTAFGRFEAGYSQGQDYDAFSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARLKSFSNVETARNGYAVLPYAQA
YRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFKANVGRRVQFELVRVDGSKVPLGASVEDEQGRALAVVDPGSQ
ALVLSEQDAGSLWVRWSDQRCQATFSLPPRDPSRAYERIRVVCR

Sequences:

>Translated_844_residues
MEWRKEVNKGVIAQCALPHPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGSDQPADLQEFLRSNSVLPGIY
RVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFGLDLSRLPPGEASAQACFDLPARVAFARVDYQPGALRLTIS
VPQAVMSRGARGYVSPELWDQGETAGFINYNFNGSRRRNKGLETEQYYVGLRNGLNVGAWRLRNESSLVGGSDRPWRYRS
NRTFAQRDITTLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIAETNATVEVRQNGFLLYSGSV
SPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASLPIMVPAGSLRYSLAGGQVDNNDDQQASPAFASVALIYGLS
ERITGFAGVQLAEDYQAANIGTGINTGLGAVSMDLTRSVSKVDQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYR
TLSQHVSDSGALRQLRASGLARDRLELSITQIVPGQSASLSLTASEQRYWNLSGKTRQLYLSYNAAWYSLNYSLSIERNE
DFGRSGDASTDNRVALSVTLPLGSSPGSSRLSFNAVRDSRGEYNAQAGLNGQVPGDRDTFYSVQAGRDSSSGSFGAGKVS
TSTAFGRFEAGYSQGQDYDAFSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARLKSFSNVETARNGYAVLPYAQA
YRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFKANVGRRVQFELVRVDGSKVPLGASVEDEQGRALAVVDPGSQ
ALVLSEQDAGSLWVRWSDQRCQATFSLPPRDPSRAYERIRVVCR
>Mature_844_residues
MEWRKEVNKGVIAQCALPHPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGSDQPADLQEFLRSNSVLPGIY
RVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFGLDLSRLPPGEASAQACFDLPARVAFARVDYQPGALRLTIS
VPQAVMSRGARGYVSPELWDQGETAGFINYNFNGSRRRNKGLETEQYYVGLRNGLNVGAWRLRNESSLVGGSDRPWRYRS
NRTFAQRDITTLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIAETNATVEVRQNGFLLYSGSV
SPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASLPIMVPAGSLRYSLAGGQVDNNDDQQASPAFASVALIYGLS
ERITGFAGVQLAEDYQAANIGTGINTGLGAVSMDLTRSVSKVDQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYR
TLSQHVSDSGALRQLRASGLARDRLELSITQIVPGQSASLSLTASEQRYWNLSGKTRQLYLSYNAAWYSLNYSLSIERNE
DFGRSGDASTDNRVALSVTLPLGSSPGSSRLSFNAVRDSRGEYNAQAGLNGQVPGDRDTFYSVQAGRDSSSGSFGAGKVS
TSTAFGRFEAGYSQGQDYDAFSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARLKSFSNVETARNGYAVLPYAQA
YRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFKANVGRRVQFELVRVDGSKVPLGASVEDEQGRALAVVDPGSQ
ALVLSEQDAGSLWVRWSDQRCQATFSLPPRDPSRAYERIRVVCR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=878, Percent_Identity=36.3325740318907, Blast_Score=497, Evalue=1e-141,
Organism=Escherichia coli, GI1786744, Length=833, Percent_Identity=32.7731092436975, Blast_Score=444, Evalue=1e-125,
Organism=Escherichia coli, GI1789533, Length=843, Percent_Identity=32.7402135231317, Blast_Score=439, Evalue=1e-124,
Organism=Escherichia coli, GI1787172, Length=840, Percent_Identity=34.7619047619048, Blast_Score=437, Evalue=1e-123,
Organism=Escherichia coli, GI1786332, Length=847, Percent_Identity=31.7591499409681, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1788427, Length=835, Percent_Identity=30.6586826347305, Blast_Score=344, Evalue=1e-95,
Organism=Escherichia coli, GI87081778, Length=815, Percent_Identity=27.8527607361963, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1789610, Length=800, Percent_Identity=25.5, Blast_Score=169, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91155; Mature: 91155

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWRKEVNKGVIAQCALPHPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGS
CCHHHHHCCCCEEEECCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECC
DQPADLQEFLRSNSVLPGIYRVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFG
CCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDLSRLPPGEASAQACFDLPARVAFARVDYQPGALRLTISVPQAVMSRGARGYVSPELWD
CCCCCCCCCCCCHHHHHCCCHHEEEEEEECCCCEEEEEEECCHHHHHCCCCCCCCHHHCC
QGETAGFINYNFNGSRRRNKGLETEQYYVGLRNGLNVGAWRLRNESSLVGGSDRPWRYRS
CCCCEEEEEECCCCCCHHCCCCCCHHEEEEECCCCCCCEEEECCCCCCCCCCCCCEEECC
NRTFAQRDITTLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIA
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHH
ETNATVEVRQNGFLLYSGSVSPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASL
HCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEHHHHHHHCC
PIMVPAGSLRYSLAGGQVDNNDDQQASPAFASVALIYGLSERITGFAGVQLAEDYQAANI
CEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC
GTGINTGLGAVSMDLTRSVSKVDQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYR
CCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEECEECCCCCEEEEEEEEECHHHHH
TLSQHVSDSGALRQLRASGLARDRLELSITQIVPGQSASLSLTASEQRYWNLSGKTRQLY
HHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCEEEECCCCEEEEE
LSYNAAWYSLNYSLSIERNEDFGRSGDASTDNRVALSVTLPLGSSPGSSRLSFNAVRDSR
EEECEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEHHCCC
GEYNAQAGLNGQVPGDRDTFYSVQAGRDSSSGSFGAGKVSTSTAFGRFEAGYSQGQDYDA
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
FSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARLKSFSNVETARNGYAVLPYAQA
EEECCCCCCEEECCCCCHHHHHCCEEEEEECCCCCCHHHHCCCCCHHHCCCEEEEECHHH
YRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFKANVGRRVQFELVRVDGSKVPL
HCCCEEEEEHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCC
GASVEDEQGRALAVVDPGSQALVLSEQDAGSLWVRWSDQRCQATFSLPPRDPSRAYERIR
CCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHH
VVCR
HCCC
>Mature Secondary Structure
MEWRKEVNKGVIAQCALPHPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGS
CCHHHHHCCCCEEEECCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECC
DQPADLQEFLRSNSVLPGIYRVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFG
CCCHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDLSRLPPGEASAQACFDLPARVAFARVDYQPGALRLTISVPQAVMSRGARGYVSPELWD
CCCCCCCCCCCCHHHHHCCCHHEEEEEEECCCCEEEEEEECCHHHHHCCCCCCCCHHHCC
QGETAGFINYNFNGSRRRNKGLETEQYYVGLRNGLNVGAWRLRNESSLVGGSDRPWRYRS
CCCCEEEEEECCCCCCHHCCCCCCHHEEEEECCCCCCCEEEECCCCCCCCCCCCCEEECC
NRTFAQRDITTLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIA
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHH
ETNATVEVRQNGFLLYSGSVSPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASL
HCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEHHHHHHHCC
PIMVPAGSLRYSLAGGQVDNNDDQQASPAFASVALIYGLSERITGFAGVQLAEDYQAANI
CEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC
GTGINTGLGAVSMDLTRSVSKVDQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYR
CCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEECEECCCCCEEEEEEEEECHHHHH
TLSQHVSDSGALRQLRASGLARDRLELSITQIVPGQSASLSLTASEQRYWNLSGKTRQLY
HHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCEEEECCCCEEEEE
LSYNAAWYSLNYSLSIERNEDFGRSGDASTDNRVALSVTLPLGSSPGSSRLSFNAVRDSR
EEECEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEHHCCC
GEYNAQAGLNGQVPGDRDTFYSVQAGRDSSSGSFGAGKVSTSTAFGRFEAGYSQGQDYDA
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
FSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARLKSFSNVETARNGYAVLPYAQA
EEECCCCCCEEECCCCCHHHHHCCEEEEEECCCCCCHHHHCCCCCHHHCCCEEEEECHHH
YRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFKANVGRRVQFELVRVDGSKVPL
HCCCEEEEEHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCC
GASVEDEQGRALAVVDPGSQALVLSEQDAGSLWVRWSDQRCQATFSLPPRDPSRAYERIR
CCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHH
VVCR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]