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The map label for this gene is fimB [H]

Identifier: 66044383

GI number: 66044383

Start: 1282904

End: 1283698

Strand: Direct

Name: fimB [H]

Synonym: Psyr_1132

Alternate gene names: 66044383

Gene position: 1282904-1283698 (Clockwise)

Preceding gene: 66044382

Following gene: 66044384

Centisome position: 21.05

GC content: 55.6

Gene sequence:

>795_bases
GTGCTCGCTCTGTCCTCTACCGAATTCAAGGCGAACGCCAGCATGTTTTCCGATTTTTTTCGCTACACGATGCTTGTTGC
GTGGTTGTTCTGCGCATCCACCGTTCAGGCGGGCATCGTATTGAATACAACGCGAGTCATTTACCAGGGCAACGACAAAG
AGGTCAGTCTGGGGGTGCACAACAGTGGCGGGGGGGAGATTCTCCTGCAGTCCTGGCTTGAATCTCCGACGACGGCGGCC
AGCAATAACGAAGGGCTGCAGAACCTGCCGTTTATTGTCACACCCGCGCTTGCGCGTATGGCCGGTGGTGGCAGGCAACT
ATTGCGGATCATTCATTCCGGTACTGACATGCCCACCGATCGTGAGTCGGTGTTATGGCTCAATGTTCAGGAAATACCCC
AGAGCGCAGCAGAAAACACGCTGCAGATCGCGGTACGTCAACGCATAAAAGTCTTCTTCCGGCCTGATGGTCTGCAGGGT
GATCCACAGCAGGCGCCGGAAAAACTGAACTGGCAACGGGTCGATGACACCGGTGTGCAGGTCGAAAATCCCGGCCCCTA
CCATGTCTCCATGCTCCGGATTTCCATACGTCAACATGACACTGAACTTGCCCTTCTGGACAGTCAGATGCTGGCGCCAC
ATCAGCGTCTGCGTATTCCGTTACAGCACACACCGGCAAGTGCGCCGTTGGTTCTGAGTTTCGTCAGTCTCAATGACTAC
GGCGGACAAGTGCCTTATCAGGCAACCCTTGGCAACAAACAACCGGTTAACGCCGGCAAGGCGTCGCCCCGATAA

Upstream 100 bases:

>100_bases
GGTGTATGTGCTTAACGGCACGCCCACCAATCCGGGTAATGCCGACGGCTTCCTGCCGTTCGTGATGGATTACGAGTAAT
CGTGTCGGACAGGGCGGGCC

Downstream 100 bases:

>100_bases
GCTGGCGCATCCACTGTCAGCGTTCACTATTCAAACCGTCGGGCCTCAGTGACAAGACAGCCCGGCAGACCTGCGTCTGT
GTAAAAGGATTGCACGGCGC

Product: pili assembly chaperone: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MLALSSTEFKANASMFSDFFRYTMLVAWLFCASTVQAGIVLNTTRVIYQGNDKEVSLGVHNSGGGEILLQSWLESPTTAA
SNNEGLQNLPFIVTPALARMAGGGRQLLRIIHSGTDMPTDRESVLWLNVQEIPQSAAENTLQIAVRQRIKVFFRPDGLQG
DPQQAPEKLNWQRVDDTGVQVENPGPYHVSMLRISIRQHDTELALLDSQMLAPHQRLRIPLQHTPASAPLVLSFVSLNDY
GGQVPYQATLGNKQPVNAGKASPR

Sequences:

>Translated_264_residues
MLALSSTEFKANASMFSDFFRYTMLVAWLFCASTVQAGIVLNTTRVIYQGNDKEVSLGVHNSGGGEILLQSWLESPTTAA
SNNEGLQNLPFIVTPALARMAGGGRQLLRIIHSGTDMPTDRESVLWLNVQEIPQSAAENTLQIAVRQRIKVFFRPDGLQG
DPQQAPEKLNWQRVDDTGVQVENPGPYHVSMLRISIRQHDTELALLDSQMLAPHQRLRIPLQHTPASAPLVLSFVSLNDY
GGQVPYQATLGNKQPVNAGKASPR
>Mature_264_residues
MLALSSTEFKANASMFSDFFRYTMLVAWLFCASTVQAGIVLNTTRVIYQGNDKEVSLGVHNSGGGEILLQSWLESPTTAA
SNNEGLQNLPFIVTPALARMAGGGRQLLRIIHSGTDMPTDRESVLWLNVQEIPQSAAENTLQIAVRQRIKVFFRPDGLQG
DPQQAPEKLNWQRVDDTGVQVENPGPYHVSMLRISIRQHDTELALLDSQMLAPHQRLRIPLQHTPASAPLVLSFVSLNDY
GGQVPYQATLGNKQPVNAGKASPR

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=250, Percent_Identity=34, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789532, Length=220, Percent_Identity=33.6363636363636, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1786743, Length=241, Percent_Identity=31.1203319502075, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1790771, Length=228, Percent_Identity=32.4561403508772, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787171, Length=224, Percent_Identity=30.8035714285714, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081806, Length=216, Percent_Identity=30.0925925925926, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788428, Length=127, Percent_Identity=37.007874015748, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788677, Length=212, Percent_Identity=31.6037735849057, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=28.1938325991189, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786936, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 29027; Mature: 29027

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALSSTEFKANASMFSDFFRYTMLVAWLFCASTVQAGIVLNTTRVIYQGNDKEVSLGVH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEEE
NSGGGEILLQSWLESPTTAASNNEGLQNLPFIVTPALARMAGGGRQLLRIIHSGTDMPTD
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHCCCHHHHHHHHHCCCCCCCC
RESVLWLNVQEIPQSAAENTLQIAVRQRIKVFFRPDGLQGDPQQAPEKLNWQRVDDTGVQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHCCCEEECCCCCE
VENPGPYHVSMLRISIRQHDTELALLDSQMLAPHQRLRIPLQHTPASAPLVLSFVSLNDY
ECCCCCEEEEEEEEEEHHCCCEEEEHHHHHHCCHHHEECCCCCCCCCCCEEEEEEEECCC
GGQVPYQATLGNKQPVNAGKASPR
CCCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLALSSTEFKANASMFSDFFRYTMLVAWLFCASTVQAGIVLNTTRVIYQGNDKEVSLGVH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEEE
NSGGGEILLQSWLESPTTAASNNEGLQNLPFIVTPALARMAGGGRQLLRIIHSGTDMPTD
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHCCCHHHHHHHHHCCCCCCCC
RESVLWLNVQEIPQSAAENTLQIAVRQRIKVFFRPDGLQGDPQQAPEKLNWQRVDDTGVQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHCCCEEECCCCCE
VENPGPYHVSMLRISIRQHDTELALLDSQMLAPHQRLRIPLQHTPASAPLVLSFVSLNDY
ECCCCCEEEEEEEEEEHHCCCEEEEHHHHHHCCHHHEECCCCCCCCCCCEEEEEEEECCC
GGQVPYQATLGNKQPVNAGKASPR
CCCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]