Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 66044376

GI number: 66044376

Start: 1273249

End: 1274778

Strand: Reverse

Name: cph2 [H]

Synonym: Psyr_1125

Alternate gene names: 66044376

Gene position: 1274778-1273249 (Counterclockwise)

Preceding gene: 66044377

Following gene: 66044374

Centisome position: 20.92

GC content: 58.43

Gene sequence:

>1530_bases
ATGATGGTGTTTGCGTTTTCTCGGCAAGCCCGGCTCAGATGGACCCGTCCGGAGCTGATATTGATTTTCGGCAGCTCGGT
TTCAATGCTCGCCATTCTGGCGATCGTGGCGTCTCTACTGGCCCGGGAGCGCGACGACGCAGCACAGACAGCAGCACGTG
CAGCATCCAATATCGTGCGTTTGATCGATGCCGACGTCATGCGTAACGCAGAACTTTACGACTCTTCCCTGCAGGGTATG
ATCAGTGCGTGGCAGCGTCCCGACCTTCAGCAACTGTCGCCTGAACTGCGCCAACTTGTACTGTTTGATCGCGCCACTGC
CGCCTCTTACAAGGGCGATCTGGTATTGCTCGATAACCGCGGCGAGATATTGGCTGATTCTTTATCTGTCATTCCTCGAC
AGGACAACTTTTCTGACCGCGCCTATTTCAAGGACCATGCAACCGACCGCTCTTTGACGCTACATGTCAGCGCGCCGTAC
AAGACACGCTGGGGCTACAAGGACTGGTGCATCAGTTTCAGCCGTCGTATATCAGGACCCGACGGTGAGTTCATGGGCAT
CGTGAGTGCGGCGATGCGCCTGGTGTATTTCAAGCACCTGTTCATGAGCCAGAACCTGGGCAGTGAAAGCAGCATCAACC
TGATCAATACCTCGGGCATTCTGATCGTTCGCTACCCGGAAATGGAAGGCCAGGATCTGATCGGCAAGGATTACAGCCAC
AGCCCCAACTTTCAGCGCATCCTTCAGGAAGGCGATGGCAGCTTCGCCGCGATGTCGACGCAGTTGAACGCTCGTCGGCT
GTATACCTTTTCCCGAGTCGGCAACCTGCCGCTGATCGTCGTCATCGGGCAATCCGAGGATGAGGTGTATGCCGTCTGGC
GGCGCAATGCCTGGCTGGTCGGCTCGGCCACCAGCGTTTTGTGTCTGGGCATTCTGTGGCTGACCTGGCTGCTGTGTCGC
GAACTGCGAAGACGCCACCGTGCCGAAGATGCGCTGGCCAGCCTGGCCGCGACCGATGGTCTGACCGGGCTCGATAACCG
CCGTCAGCTTGACGAAGCCATGGAGATCGAATGGGCGCGAGCGCAACGCTCTGGCAAGCCGCTGTCATTGCTGATGATCG
ACGTAGACCATTTCAAGGCATTCAATGAGCGTCATGGCCATCAGGGCGGGGACGAGGCGCTGCGTCTGATTGCGCAGACC
ATCTCATACTGCATCCGCCGTCCGGGCGACCGGGTGGCACGCTATGGCGGCGAAGAGTTCGTGGTGGTGCTGCCGGAAAC
AGATTTGCCGGGCGCCATGCTGATCGCGGAAAAAATCCGCAAGGCCGCAGAGTCACTGCCGCTGTTCAGGAATGCCGAGC
ATCCCATCACCGTGAGCATCGGGGTCGCTTCGGAGGTCGTTCGCCAGGGCGACAAACTGGAGGCATTTTTCGGGGTAGCC
GACAAGGCGCTGTATCAGGCCAAGGACAATGGACGTAACCGGGTCGAGTACCGCAGTTCGGTTGCCAGAAAGGTGACCGA
TCAGGTTTGA

Upstream 100 bases:

>100_bases
TATAAGGAGCGTGTTATACACGCATCATTAAGTTCCCCAAATAACTGATAATTTTATTAACCGATTATCAAGAATCATTC
GTCTGCAGGTAGAACAACCG

Downstream 100 bases:

>100_bases
CGGGCTGCCTTCGGGCATAAAAAAACGCCAGACTGGCTGGCGTTTTTTTGGTTACAGCTGAGGCATCGAATTACGATGCG
GCGCGGGCTGCGTCACGCAG

Product: GGDEF

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVRLIDADVMRNAELYDSSLQGM
ISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNRGEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPY
KTRWGYKDWCISFSRRISGPDGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSH
SPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLVGSATSVLCLGILWLTWLLCR
ELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWARAQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQT
ISYCIRRPGDRVARYGGEEFVVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVA
DKALYQAKDNGRNRVEYRSSVARKVTDQV

Sequences:

>Translated_509_residues
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVRLIDADVMRNAELYDSSLQGM
ISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNRGEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPY
KTRWGYKDWCISFSRRISGPDGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSH
SPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLVGSATSVLCLGILWLTWLLCR
ELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWARAQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQT
ISYCIRRPGDRVARYGGEEFVVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVA
DKALYQAKDNGRNRVEYRSSVARKVTDQV
>Mature_509_residues
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVRLIDADVMRNAELYDSSLQGM
ISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNRGEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPY
KTRWGYKDWCISFSRRISGPDGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSH
SPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLVGSATSVLCLGILWLTWLLCR
ELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWARAQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQT
ISYCIRRPGDRVARYGGEEFVVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVA
DKALYQAKDNGRNRVEYRSSVARKVTDQV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=40.3225806451613, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=42.4050632911392, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1787262, Length=174, Percent_Identity=37.9310344827586, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=32.7272727272727, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=192, Percent_Identity=35.4166666666667, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=35.8024691358025, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081974, Length=229, Percent_Identity=28.3842794759825, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=35.1190476190476, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=184, Percent_Identity=32.0652173913043, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=28.2485875706215, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 57160; Mature: 57160

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVR
CEEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LIDADVMRNAELYDSSLQGMISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNR
HHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCCCEEEECCC
GEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPYKTRWGYKDWCISFSRRISGP
CCHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCC
DGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSH
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCC
SPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLV
CCCHHHHHHCCCCCEEEEECCCCHHHEEEHHHCCCCCEEEEEECCCCCEEEEEECCEEEE
GSATSVLCLGILWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWAR
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEF
HHCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEE
VVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVA
EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHH
DKALYQAKDNGRNRVEYRSSVARKVTDQV
HHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVR
CEEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LIDADVMRNAELYDSSLQGMISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNR
HHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCCCEEEECCC
GEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPYKTRWGYKDWCISFSRRISGP
CCHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCC
DGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSH
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCC
SPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLV
CCCHHHHHHCCCCCEEEEECCCCHHHEEEHHHCCCCCEEEEEECCCCCEEEEEECCEEEE
GSATSVLCLGILWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWAR
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEF
HHCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEE
VVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVA
EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHH
DKALYQAKDNGRNRVEYRSSVARKVTDQV
HHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]