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The map label for this gene is yhdX [H]

Identifier: 66044326

GI number: 66044326

Start: 1216047

End: 1217228

Strand: Direct

Name: yhdX [H]

Synonym: Psyr_1073

Alternate gene names: 66044326

Gene position: 1216047-1217228 (Clockwise)

Preceding gene: 66044325

Following gene: 66044327

Centisome position: 19.96

GC content: 58.38

Gene sequence:

>1182_bases
ATGGAAAAGCAAATCGTCGCACCCAAGCAAAAGCTCTCTCTGAGCGATCCGAAAGTGCGCGCGTGGTTATTTCAGATCAT
CACTGTCGTGGCGGTGATCGCGTTGGGCTGGTTCATTTTCGACAACACCCAGACCAACCTGCAACACCGTGGTATTACCT
CGGGTTTCGGTTTTCTTGAGAACAGTGCCGGTTTCGGTATCGCTCAGCACCTGATCGACTACAGCGAAGCGGACAGCTAT
GCCCGTGTGTTCGTCATCGGCCTGCTGAATACCTTGCTGGTGTCGGTTATCGGTATCGTCCTGGCGACCTTGCTGGGCTT
TGTCATTGGTGTCGCTCGCCTGTCTCCGAACTGGATGATCAGCAAGCTGGCCACCGTGTATGTCGAAGTCTTCCGCAACA
TTCCACCGCTGCTGCAGATCCTGTTCTGGTACACCGCCGTATTCCTCACGCTGCCTGGTCCGCGTCAGGCGCATGGCTAT
CTGGACATGTTCTTCGTCAGCAGCCGCGGGCTCAACATGCCCAGAGCATTGCCTGCCGAAGGCGCCTGGGCATTCCTGAT
CAGTCTGGTGGTTGCCGTGATCGCCATCGTCATGATGGTGCGCTGGGCCAACAAGCGCTTCGAAGCCACCGGCCAGCCGT
TTCACAAGTTCTGGGTCGGCCTGGCGTTGTTGCTGGTTATCCCCGGTCTGAGCATGCTGATCTTCGGCAGCCCGGTGCAT
TGGGAGCTGCCGCAGCTGAAGGGCTTCAATTTCTCGGGCGGCTGGGTGCTGATCCCTGAACTGATCTCCCTGACCCTGGC
ACTGACTATCTATACGGCGGCGTTCATCGCTGAAATCGTGCGTTCCGGCATCAAGTCGGTCAGCCATGGCCAGACCGAAG
CTGCTCGCTCATTGGGCCTGCGCCCTGGGCCGACGCTGCGCAAGGTGATCATCCCGCAGGCGCTGCGCGTGATCATTCCG
CCGCTGACCAGTCAGTTCCTGAACCTGGCGAAGAACTCTTCGCTGGCAGCCGCCATCGGCTACCCGGAAATGGTTTCCCT
GTTCGCCGGTACGGTGCTCAACCAGACCGGGCAGGCCATTGAAGTCATTGCCATCACCATGAGCGTGTACCTGGCGATCA
GTATCAGCATTTCCCTGCTGATGAACTGGTACAACAAGCGCATTGCGCTGATCGAGCGGTGA

Upstream 100 bases:

>100_bases
GGCATCCAGTACGCTCCACCTATTCGTTGATTGACCCGGCGCCCGACAGGCTTCCCAGCCTGTCGGGCGTTGTTCTGTTG
GATTTTTCCTGGGGCATTTC

Downstream 100 bases:

>100_bases
GGAAAAGCGCATGACAACTCATACTTTCAAACCTGATATGCCACCACCGGGCAAAGTGTTCGGCCCGATGGCGTGGATGC
GGCAGAACCTGTTCTCCAGC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MEKQIVAPKQKLSLSDPKVRAWLFQIITVVAVIALGWFIFDNTQTNLQHRGITSGFGFLENSAGFGIAQHLIDYSEADSY
ARVFVIGLLNTLLVSVIGIVLATLLGFVIGVARLSPNWMISKLATVYVEVFRNIPPLLQILFWYTAVFLTLPGPRQAHGY
LDMFFVSSRGLNMPRALPAEGAWAFLISLVVAVIAIVMMVRWANKRFEATGQPFHKFWVGLALLLVIPGLSMLIFGSPVH
WELPQLKGFNFSGGWVLIPELISLTLALTIYTAAFIAEIVRSGIKSVSHGQTEAARSLGLRPGPTLRKVIIPQALRVIIP
PLTSQFLNLAKNSSLAAAIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYLAISISISLLMNWYNKRIALIER

Sequences:

>Translated_393_residues
MEKQIVAPKQKLSLSDPKVRAWLFQIITVVAVIALGWFIFDNTQTNLQHRGITSGFGFLENSAGFGIAQHLIDYSEADSY
ARVFVIGLLNTLLVSVIGIVLATLLGFVIGVARLSPNWMISKLATVYVEVFRNIPPLLQILFWYTAVFLTLPGPRQAHGY
LDMFFVSSRGLNMPRALPAEGAWAFLISLVVAVIAIVMMVRWANKRFEATGQPFHKFWVGLALLLVIPGLSMLIFGSPVH
WELPQLKGFNFSGGWVLIPELISLTLALTIYTAAFIAEIVRSGIKSVSHGQTEAARSLGLRPGPTLRKVIIPQALRVIIP
PLTSQFLNLAKNSSLAAAIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYLAISISISLLMNWYNKRIALIER
>Mature_393_residues
MEKQIVAPKQKLSLSDPKVRAWLFQIITVVAVIALGWFIFDNTQTNLQHRGITSGFGFLENSAGFGIAQHLIDYSEADSY
ARVFVIGLLNTLLVSVIGIVLATLLGFVIGVARLSPNWMISKLATVYVEVFRNIPPLLQILFWYTAVFLTLPGPRQAHGY
LDMFFVSSRGLNMPRALPAEGAWAFLISLVVAVIAIVMMVRWANKRFEATGQPFHKFWVGLALLLVIPGLSMLIFGSPVH
WELPQLKGFNFSGGWVLIPELISLTLALTIYTAAFIAEIVRSGIKSVSHGQTEAARSLGLRPGPTLRKVIIPQALRVIIP
PLTSQFLNLAKNSSLAAAIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYLAISISISLLMNWYNKRIALIER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=387, Percent_Identity=62.2739018087855, Blast_Score=466, Evalue=1e-132,
Organism=Escherichia coli, GI1788226, Length=134, Percent_Identity=38.0597014925373, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786874, Length=130, Percent_Identity=36.9230769230769, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786873, Length=130, Percent_Identity=34.6153846153846, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082239, Length=132, Percent_Identity=31.0606060606061, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787030, Length=126, Percent_Identity=30.952380952381, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788645, Length=122, Percent_Identity=31.9672131147541, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43217; Mature: 43217

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]