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The map label for this gene is yhdY [H]

Identifier: 66044327

GI number: 66044327

Start: 1217239

End: 1218336

Strand: Direct

Name: yhdY [H]

Synonym: Psyr_1074

Alternate gene names: 66044327

Gene position: 1217239-1218336 (Clockwise)

Preceding gene: 66044326

Following gene: 66044328

Centisome position: 19.98

GC content: 59.74

Gene sequence:

>1098_bases
ATGACAACTCATACTTTCAAACCTGATATGCCACCACCGGGCAAAGTGTTCGGCCCGATGGCGTGGATGCGGCAGAACCT
GTTCTCCAGCTGGATCAACACCCTGCTGACCCTGTTCTCGCTGTATCTGATCTATCTGGTCGTACCACCGATCATCAGTT
GGGCCCTGCTGGACGCCAACTGGATCGGCACGACCAAGGCAGACTGCACCAAGGCGGGCGCCTGCTGGGTGTTCATCGAG
CAGCGCTTCGGTCAGTTCATGTATGGCTACTTCCCCAATGAACTGCGCTGGAGGGTCGACCTGACCGCCATCCTGGCGAT
CGTCGGCGCTGCGCCGCTGTTCATCTCGAAGTTTCCGCGCAAGGCTGTCTACGGTATTGCCTTCCTGGTGATCTACCCGG
TTGTCGCGTTCTACCTGCTGCATGGCGGCGCGTTCGGTCTGACCAACGTACCGACCAGCCAGTGGGGCGGTCTGATGCTG
ACCCTGGTGATCGCCACCGTGGGTATCGTCGGTGCCTTGCCGCTGGGTATCCTGCTGGCGCTCGGTCGTCGTTCCAACAT
GCCGGCCGTGCGTGTGGTGTGCGTGACCTTCATCGAGTTCTGGCGCGGCGTGCCGCTGATCACCGTGCTGTTCATGTCGT
CGGTGATGCTGCCGCTGTTCATGCCAGAGGGCATGAACTTCGACAAGCTGCTGCGTGCGCTGATCGGCGTCATCCTGTTC
CAGTCCGCGTACATCGCTGAAGTGGTGCGTGGCGGCATGCAGGCCATTCCCAAGGGCCAGTACGAAGCTGCCTCGGCGAT
GGGCCTGGGTTACTGGCGCAGCATGGGTCTGGTGATCCTGCCGCAGGCGTTGAAGATGGTCATTCCCGGCATCGTCAACA
CCTTCATTGCCTTGTTCAAGGACACCAGTCTGGTGATCATTATCGGTCTGTTCGACCTGCTCAACAGCGTCAAGCAGGCT
ACCGCCGACCCGGCATGGCTGGGTATGGCCACTGAAGGCTACGTCTTCGCGGCCCTGGTGTTCTGGATCTTCTGTTTCGG
TATGTCCCGCTATTCCATGCATTTGGAACGTAAGCTGGACACAGGCCACAAGCGTTAG

Upstream 100 bases:

>100_bases
ATCACCATGAGCGTGTACCTGGCGATCAGTATCAGCATTTCCCTGCTGATGAACTGGTACAACAAGCGCATTGCGCTGAT
CGAGCGGTGAGGAAAAGCGC

Downstream 100 bases:

>100_bases
GAGTTTTGTGATGAGTGAAGTTATCAATAAGCCTCTGGGCGCTGAAGGCATGATCCGCATGGAGGGCGTACACAAGTGGT
ACGGCCAGTTCCATGTACTC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MTTHTFKPDMPPPGKVFGPMAWMRQNLFSSWINTLLTLFSLYLIYLVVPPIISWALLDANWIGTTKADCTKAGACWVFIE
QRFGQFMYGYFPNELRWRVDLTAILAIVGAAPLFISKFPRKAVYGIAFLVIYPVVAFYLLHGGAFGLTNVPTSQWGGLML
TLVIATVGIVGALPLGILLALGRRSNMPAVRVVCVTFIEFWRGVPLITVLFMSSVMLPLFMPEGMNFDKLLRALIGVILF
QSAYIAEVVRGGMQAIPKGQYEAASAMGLGYWRSMGLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQA
TADPAWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR

Sequences:

>Translated_365_residues
MTTHTFKPDMPPPGKVFGPMAWMRQNLFSSWINTLLTLFSLYLIYLVVPPIISWALLDANWIGTTKADCTKAGACWVFIE
QRFGQFMYGYFPNELRWRVDLTAILAIVGAAPLFISKFPRKAVYGIAFLVIYPVVAFYLLHGGAFGLTNVPTSQWGGLML
TLVIATVGIVGALPLGILLALGRRSNMPAVRVVCVTFIEFWRGVPLITVLFMSSVMLPLFMPEGMNFDKLLRALIGVILF
QSAYIAEVVRGGMQAIPKGQYEAASAMGLGYWRSMGLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQA
TADPAWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR
>Mature_364_residues
TTHTFKPDMPPPGKVFGPMAWMRQNLFSSWINTLLTLFSLYLIYLVVPPIISWALLDANWIGTTKADCTKAGACWVFIEQ
RFGQFMYGYFPNELRWRVDLTAILAIVGAAPLFISKFPRKAVYGIAFLVIYPVVAFYLLHGGAFGLTNVPTSQWGGLMLT
LVIATVGIVGALPLGILLALGRRSNMPAVRVVCVTFIEFWRGVPLITVLFMSSVMLPLFMPEGMNFDKLLRALIGVILFQ
SAYIAEVVRGGMQAIPKGQYEAASAMGLGYWRSMGLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQAT
ADPAWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=357, Percent_Identity=65.8263305322129, Blast_Score=503, Evalue=1e-144,
Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=36.5853658536585, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=31.4009661835749, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=31.3725490196078, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786874, Length=184, Percent_Identity=27.7173913043478, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=77, Percent_Identity=40.2597402597403, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788645, Length=181, Percent_Identity=27.6243093922652, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787087, Length=185, Percent_Identity=26.4864864864865, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40505; Mature: 40374

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure 
TTHTFKPDMPPPGKVFGPMAWMRQNLFSSWINTLLTLFSLYLIYLVVPPIISWALLDAN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]