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The map label for this gene is yhdW [H]

Identifier: 66044325

GI number: 66044325

Start: 1214948

End: 1215976

Strand: Direct

Name: yhdW [H]

Synonym: Psyr_1072

Alternate gene names: 66044325

Gene position: 1214948-1215976 (Clockwise)

Preceding gene: 66044322

Following gene: 66044326

Centisome position: 19.94

GC content: 58.31

Gene sequence:

>1029_bases
ATGAAGATGTTGAAATCCACCCTGGCTGTCGTCACTGCCTTGGCCGCATTTGGTGTGATCGGGGCTGCAAACGCCGGTAC
CACCCTTGACGCTATCAAGAAGAAAGGTTTTATCCAGTGCGGCGTCAGCGATGGCCTGCCAGGGTTTTCCGTTCCGGACT
CTACCGGTAAGATCACCGGTATCGATGCTGACGTCTGCCGCGCAGTAGCCGCCGCAGTATTCGGCGACGCCACCAAGGTC
AAGTTCAGCCAGTTGAACGCCAAGGAGCGCTTCACCGCACTGCAATCGGGCGAGATCGACATCCTTTCGCGTAACACCAC
CTGGACCAGCTCCCGCGACGCGGGCATGGGCCTGGTGTTCACCGGCGTGACTTACTACGACGGTATCGGCTTCCTGGTAA
ACAACAAGCTGGGCGTCAAGAGCGCCAAGGAACTGGACGGTGCAACCATCTGCATCCAGGCCGGTACCACTACCGAGCTG
AACGTCTCCGACTACTTCCGCTCGAACGGCCTGAAATACACCCCGATCACCTTCGACACCTCCGACGAAAGCGCCAAGTC
GCTGGAAGGCGGCCGTTGCGACGTACTGACTTCCGACCAGTCGCAACTTTACGCGCAGCGCAGCAAGCTGGCCAAGCCGG
ACGATTACATCGTGCTGCCTGAAGTGATCTCCAAGGAGCCTCTGGGCCCTGTCGTGCGTAAAGGCGACGAAGAGTGGTTC
TCGATCGTTCGCTGGACCCTGTTCGCCATGCTCAATGCCGAGGAAGCCAAAATCACTTCCAAGAACGTTGAAGCTGAAGC
CAAGTCGACCAAGAACCCTGACGTAGCCCGTATGCTCGGCGCAGACGGTACTTACGGCAAAGACCTGAAGCTCGAGAAAG
ACTGGGTCGTGCAGATCGTCAAGCAGGTCGGCAACTACGGCGAAGTGTTCGAACGCAACCTGGGCGAAGGCACCCCGCTG
AAAATCAAGCGTGGCCAGAACGCTCTGTGGAATGCCGGTGGCATCCAGTACGCTCCACCTATTCGTTGA

Upstream 100 bases:

>100_bases
GCATGACCCAAAAATAAGCCAGCACGGGTTATTAGCGCCTCACAAAGGTGCGACGCGACTGAAACACCTACACAACAAAG
AGCAAACTGGAGGTTTTTGA

Downstream 100 bases:

>100_bases
TTGACCCGGCGCCCGACAGGCTTCCCAGCCTGTCGGGCGTTGTTCTGTTGGATTTTTCCTGGGGCATTTCATGGAAAAGC
AAATCGTCGCACCCAAGCAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKMLKSTLAVVTALAAFGVIGAANAGTTLDAIKKKGFIQCGVSDGLPGFSVPDSTGKITGIDADVCRAVAAAVFGDATKV
KFSQLNAKERFTALQSGEIDILSRNTTWTSSRDAGMGLVFTGVTYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTEL
NVSDYFRSNGLKYTPITFDTSDESAKSLEGGRCDVLTSDQSQLYAQRSKLAKPDDYIVLPEVISKEPLGPVVRKGDEEWF
SIVRWTLFAMLNAEEAKITSKNVEAEAKSTKNPDVARMLGADGTYGKDLKLEKDWVVQIVKQVGNYGEVFERNLGEGTPL
KIKRGQNALWNAGGIQYAPPIR

Sequences:

>Translated_342_residues
MKMLKSTLAVVTALAAFGVIGAANAGTTLDAIKKKGFIQCGVSDGLPGFSVPDSTGKITGIDADVCRAVAAAVFGDATKV
KFSQLNAKERFTALQSGEIDILSRNTTWTSSRDAGMGLVFTGVTYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTEL
NVSDYFRSNGLKYTPITFDTSDESAKSLEGGRCDVLTSDQSQLYAQRSKLAKPDDYIVLPEVISKEPLGPVVRKGDEEWF
SIVRWTLFAMLNAEEAKITSKNVEAEAKSTKNPDVARMLGADGTYGKDLKLEKDWVVQIVKQVGNYGEVFERNLGEGTPL
KIKRGQNALWNAGGIQYAPPIR
>Mature_342_residues
MKMLKSTLAVVTALAAFGVIGAANAGTTLDAIKKKGFIQCGVSDGLPGFSVPDSTGKITGIDADVCRAVAAAVFGDATKV
KFSQLNAKERFTALQSGEIDILSRNTTWTSSRDAGMGLVFTGVTYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTEL
NVSDYFRSNGLKYTPITFDTSDESAKSLEGGRCDVLTSDQSQLYAQRSKLAKPDDYIVLPEVISKEPLGPVVRKGDEEWF
SIVRWTLFAMLNAEEAKITSKNVEAEAKSTKNPDVARMLGADGTYGKDLKLEKDWVVQIVKQVGNYGEVFERNLGEGTPL
KIKRGQNALWNAGGIQYAPPIR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1786876, Length=236, Percent_Identity=25.4237288135593, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 36775; Mature: 36775

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMLKSTLAVVTALAAFGVIGAANAGTTLDAIKKKGFIQCGVSDGLPGFSVPDSTGKITG
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEC
IDADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDILSRNTTWTSSRDAGMGLVF
CCHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEE
TGVTYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTELNVSDYFRSNGLKYTPITFDT
ECCHHHCCEEEEEECCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHCCCCEECEEEECC
SDESAKSLEGGRCDVLTSDQSQLYAQRSKLAKPDDYIVLPEVISKEPLGPVVRKGDEEWF
CCCHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEECHHHCCCCCCHHHHCCCHHHH
SIVRWTLFAMLNAEEAKITSKNVEAEAKSTKNPDVARMLGADGTYGKDLKLEKDWVVQIV
HHHHHHHHHHHCCHHHEECCCCCCCHHHCCCCCHHHHHHCCCCCCCCCCEECHHHHHHHH
KQVGNYGEVFERNLGEGTPLKIKRGQNALWNAGGIQYAPPIR
HHHCCHHHHHHHHCCCCCCEEEECCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MKMLKSTLAVVTALAAFGVIGAANAGTTLDAIKKKGFIQCGVSDGLPGFSVPDSTGKITG
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEC
IDADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDILSRNTTWTSSRDAGMGLVF
CCHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEE
TGVTYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTELNVSDYFRSNGLKYTPITFDT
ECCHHHCCEEEEEECCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHCCCCEECEEEECC
SDESAKSLEGGRCDVLTSDQSQLYAQRSKLAKPDDYIVLPEVISKEPLGPVVRKGDEEWF
CCCHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEECHHHCCCCCCHHHHCCCHHHH
SIVRWTLFAMLNAEEAKITSKNVEAEAKSTKNPDVARMLGADGTYGKDLKLEKDWVVQIV
HHHHHHHHHHHCCHHHEECCCCCCCHHHCCCCCHHHHHHCCCCCCCCCCEECHHHHHHHH
KQVGNYGEVFERNLGEGTPLKIKRGQNALWNAGGIQYAPPIR
HHHCCHHHHHHHHCCCCCCEEEECCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]