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The map label for this gene is yiaD [H]

Identifier: 66044258

GI number: 66044258

Start: 1139440

End: 1140129

Strand: Direct

Name: yiaD [H]

Synonym: Psyr_1005

Alternate gene names: 66044258

Gene position: 1139440-1140129 (Clockwise)

Preceding gene: 66044257

Following gene: 66044262

Centisome position: 18.7

GC content: 60.29

Gene sequence:

>690_bases
ATGTTTACCTCGCGTCGTTTGATCATTGTTGCCACCGCCGTAGCCATGCTTTCCGGCTGTGCAACATCCAATCCCTATGA
CAATCAAGGCCAGGCGCAAAGCTCCGGTGGTATGAGCAAAACGGCCAAGTACGGCGGACTCGGCGCATTGGCCGGTGCGG
TAGCCGGCGCGGCCATCGATCACAATCATCGCGGCAAGGGTGCCCTGATTGGCGCAGCAGTGGCAGGTGCCGCATCGGCG
GGTTATGGCTACTACGCAGACAAGCAGGAAGCTGCGCTGCGCGAGAGCATGGCCAACACCGGTGTCGAGGTACAGCGTCA
GGGTGACCAGATCAAACTGATCATGCCGGGTAACATCACGTTCGCGACGGACTCTTCGGCCATTGCCAGCAGCTTCTATT
CGCCGCTCAACAATCTGGCCAGCTCGCTCAAGCAGTTCAACCAGAACAACATTGAAATCGTCGGTTACACCGACAGCACC
GGCAGCCGCCAGCACAACATGGACCTGTCGCAACAGCGCGCCCAGAGCGTCGCGACTTACCTGACCTCGCAGGGCGTCGA
TCAAGCGCACCTGTCAGTGCGCGGTGCAGGGCCTGATCAACCGATTGCCAGCAACGCCGACGTCAACGGCCGCGCCCAGA
ACCGTCGCGTAGAGGTCAACCTCAAGCCGATTCCGGGTCAGCAGTACTGA

Upstream 100 bases:

>100_bases
AAGCCCGCAAGACGGGCGGTTCAGCACGGGTTAAGGAATTTTTGATAGCGGGTATGCTCTAATCCGGTTACCAGCGTTCG
TCAAAACCAGGAGCACCTGA

Downstream 100 bases:

>100_bases
TCGACACCGCTGCGTCCACCTGACGGCGGACGCAGAGTATCAGCACGATAGTTGAGATCATCGTTCCTCACGCTCCAGCG
TGGCAATGCAGTTCGCGACG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MFTSRRLIIVATAVAMLSGCATSNPYDNQGQAQSSGGMSKTAKYGGLGALAGAVAGAAIDHNHRGKGALIGAAVAGAASA
GYGYYADKQEAALRESMANTGVEVQRQGDQIKLIMPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYTDST
GSRQHNMDLSQQRAQSVATYLTSQGVDQAHLSVRGAGPDQPIASNADVNGRAQNRRVEVNLKPIPGQQY

Sequences:

>Translated_229_residues
MFTSRRLIIVATAVAMLSGCATSNPYDNQGQAQSSGGMSKTAKYGGLGALAGAVAGAAIDHNHRGKGALIGAAVAGAASA
GYGYYADKQEAALRESMANTGVEVQRQGDQIKLIMPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYTDST
GSRQHNMDLSQQRAQSVATYLTSQGVDQAHLSVRGAGPDQPIASNADVNGRAQNRRVEVNLKPIPGQQY
>Mature_229_residues
MFTSRRLIIVATAVAMLSGCATSNPYDNQGQAQSSGGMSKTAKYGGLGALAGAVAGAAIDHNHRGKGALIGAAVAGAASA
GYGYYADKQEAALRESMANTGVEVQRQGDQIKLIMPGNITFATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYTDST
GSRQHNMDLSQQRAQSVATYLTSQGVDQAHLSVRGAGPDQPIASNADVNGRAQNRRVEVNLKPIPGQQY

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=224, Percent_Identity=45.9821428571429, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787191, Length=114, Percent_Identity=34.2105263157895, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23854; Mature: 23854

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTSRRLIIVATAVAMLSGCATSNPYDNQGQAQSSGGMSKTAKYGGLGALAGAVAGAAID
CCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHC
HNHRGKGALIGAAVAGAASAGYGYYADKQEAALRESMANTGVEVQRQGDQIKLIMPGNIT
CCCCCCCEEEHHHHHCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEE
FATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYTDSTGSRQHNMDLSQQRAQSVATY
EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
LTSQGVDQAHLSVRGAGPDQPIASNADVNGRAQNRRVEVNLKPIPGQQY
HHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MFTSRRLIIVATAVAMLSGCATSNPYDNQGQAQSSGGMSKTAKYGGLGALAGAVAGAAID
CCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHC
HNHRGKGALIGAAVAGAASAGYGYYADKQEAALRESMANTGVEVQRQGDQIKLIMPGNIT
CCCCCCCEEEHHHHHCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEE
FATDSSAIASSFYSPLNNLASSLKQFNQNNIEIVGYTDSTGSRQHNMDLSQQRAQSVATY
EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
LTSQGVDQAHLSVRGAGPDQPIASNADVNGRAQNRRVEVNLKPIPGQQY
HHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]