Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is yufQ [H]

Identifier: 66044257

GI number: 66044257

Start: 1138407

End: 1139333

Strand: Direct

Name: yufQ [H]

Synonym: Psyr_1004

Alternate gene names: 66044257

Gene position: 1138407-1139333 (Clockwise)

Preceding gene: 66044256

Following gene: 66044258

Centisome position: 18.68

GC content: 66.34

Gene sequence:

>927_bases
ATGGAGCTTATTTCCCACTGGCTGGGCAGCGCACCGGATTTTGCCGTGCCGTTCGCCCTGGCAGCGCTTGGCCTGATCCT
CATCGAGCGCAGCGGTGTACTGGCACTGGGCGTCGAAGGGCTGATGCTGGTCGGCGCACTGGCGGGCATCGGCATGCAGT
TGAGCCTCGGCTCGCCGGGCCTTTCGCTGCTGGCGTCGATGGCGGCGGCAGGTCTGGTGTCGTTGCTGTTTGCGCTGATG
GTGCTGGTGTTGCGGATCAACCAGGTGATCGCCGGGCTGGCGCTGGTGTTCTTTTGTCAGGGCTTGACCGGGCTGCTGGG
CACGCTGCTGGGCTGGACCAACCGTCCGGTCAGCGGCCTTCAGGCGGTCGAGCTGTGGCCGTTGTCCGAGCTGCCCGTGG
TGGGCCGGGTATTTGTGCAGAACCCGCTGGTGTACCTGACCGTGGTGATTTTCATCGCGGTGGTCTGGCTGCTCGATCGC
ACGCGCACCGGGCTGCGTTTGCGCGCGGTGGGCGAGAACCCGCAGGCCGCCGATGCCGCAGGTATTTCCGTGCTCGGTTA
CCGCCTGGCGGCGATTGTCGCCGGCTCCGCGTTGATGGGGCTGGCCGGCGGTTTCATTGCCGTGCTCAGCACCAAGATGT
GGATCGCCGACATGACCGGCGGACGCGGCTGGATCGCGGTTTCACTGGTGATCTTCGCGCGCTGGTCGCCGTGGCGTGCG
CTGGCCGGTGCCTTGCTGTTCGGCGGTATCGAGGCGCTGATTCCGCAGTTGGCGGCAACCGGCGTGCGCCTGCCTCAGTA
TTTCGTCTTGATGACGCCCTATGCGGTCACCCTGTTGGTCATGGTCTGGGTGGCGAGCGGCAAGCGTCAATCGAGCAGCC
AGCCCGGTGCGCTGGGCGAACCCTACATTCGCGAGGAGCGCCGCTGA

Upstream 100 bases:

>100_bases
CGATGGTGCAACTGATCCAGGCGATTCTGGTGATCTGCGTCGCGTCGTCGGATTTTTTCATCCGCCATCGTCTGCGGCGC
ATTCAGGCAGGAGAACGTTG

Downstream 100 bases:

>100_bases
GCGCAGAAGCCCGCAAGACGGGCGGTTCAGCACGGGTTAAGGAATTTTTGATAGCGGGTATGCTCTAATCCGGTTACCAG
CGTTCGTCAAAACCAGGAGC

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MELISHWLGSAPDFAVPFALAALGLILIERSGVLALGVEGLMLVGALAGIGMQLSLGSPGLSLLASMAAAGLVSLLFALM
VLVLRINQVIAGLALVFFCQGLTGLLGTLLGWTNRPVSGLQAVELWPLSELPVVGRVFVQNPLVYLTVVIFIAVVWLLDR
TRTGLRLRAVGENPQAADAAGISVLGYRLAAIVAGSALMGLAGGFIAVLSTKMWIADMTGGRGWIAVSLVIFARWSPWRA
LAGALLFGGIEALIPQLAATGVRLPQYFVLMTPYAVTLLVMVWVASGKRQSSSQPGALGEPYIREERR

Sequences:

>Translated_308_residues
MELISHWLGSAPDFAVPFALAALGLILIERSGVLALGVEGLMLVGALAGIGMQLSLGSPGLSLLASMAAAGLVSLLFALM
VLVLRINQVIAGLALVFFCQGLTGLLGTLLGWTNRPVSGLQAVELWPLSELPVVGRVFVQNPLVYLTVVIFIAVVWLLDR
TRTGLRLRAVGENPQAADAAGISVLGYRLAAIVAGSALMGLAGGFIAVLSTKMWIADMTGGRGWIAVSLVIFARWSPWRA
LAGALLFGGIEALIPQLAATGVRLPQYFVLMTPYAVTLLVMVWVASGKRQSSSQPGALGEPYIREERR
>Mature_308_residues
MELISHWLGSAPDFAVPFALAALGLILIERSGVLALGVEGLMLVGALAGIGMQLSLGSPGLSLLASMAAAGLVSLLFALM
VLVLRINQVIAGLALVFFCQGLTGLLGTLLGWTNRPVSGLQAVELWPLSELPVVGRVFVQNPLVYLTVVIFIAVVWLLDR
TRTGLRLRAVGENPQAADAAGISVLGYRLAAIVAGSALMGLAGGFIAVLSTKMWIADMTGGRGWIAVSLVIFARWSPWRA
LAGALLFGGIEALIPQLAATGVRLPQYFVLMTPYAVTLLVMVWVASGKRQSSSQPGALGEPYIREERR

Specific function: Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane [H]

COG id: COG1079

COG function: function code R; Uncharacterized ABC-type transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32425; Mature: 32425

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELISHWLGSAPDFAVPFALAALGLILIERSGVLALGVEGLMLVGALAGIGMQLSLGSPG
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCEEEECCCCH
LSLLASMAAAGLVSLLFALMVLVLRINQVIAGLALVFFCQGLTGLLGTLLGWTNRPVSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QAVELWPLSELPVVGRVFVQNPLVYLTVVIFIAVVWLLDRTRTGLRLRAVGENPQAADAA
HHEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
GISVLGYRLAAIVAGSALMGLAGGFIAVLSTKMWIADMTGGRGWIAVSLVIFARWSPWRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCHHHH
LAGALLFGGIEALIPQLAATGVRLPQYFVLMTPYAVTLLVMVWVASGKRQSSSQPGALGE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PYIREERR
CHHHCCCC
>Mature Secondary Structure
MELISHWLGSAPDFAVPFALAALGLILIERSGVLALGVEGLMLVGALAGIGMQLSLGSPG
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCEEEECCCCH
LSLLASMAAAGLVSLLFALMVLVLRINQVIAGLALVFFCQGLTGLLGTLLGWTNRPVSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QAVELWPLSELPVVGRVFVQNPLVYLTVVIFIAVVWLLDRTRTGLRLRAVGENPQAADAA
HHEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
GISVLGYRLAAIVAGSALMGLAGGFIAVLSTKMWIADMTGGRGWIAVSLVIFARWSPWRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCHHHH
LAGALLFGGIEALIPQLAATGVRLPQYFVLMTPYAVTLLVMVWVASGKRQSSSQPGALGE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PYIREERR
CHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]