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The map label for this gene is oprD [H]

Identifier: 66044158

GI number: 66044158

Start: 1022073

End: 1023341

Strand: Reverse

Name: oprD [H]

Synonym: Psyr_0903

Alternate gene names: 66044158

Gene position: 1023341-1022073 (Counterclockwise)

Preceding gene: 66044160

Following gene: 66044157

Centisome position: 16.79

GC content: 60.6

Gene sequence:

>1269_bases
ATGACATCTCACACTACCCGCTCACGCATCCTGCTGGGCGTCGGCGGCATGACGCTGATTTTCCCGATGCTCGGCATGGC
CGAGGGTTTCGTCGACGACACCAAGGCCACGCTCAACCTGCGTAATGCCTACTTCAACCGTAATTTCACCAATCCTGCGT
ACCCCAGCAGCGCAGCGCCGCAGGGCAAGGCCGAGGAATGGACACAAAGCTTCATTCTCGACGCCAAGTCGGGCTTCACT
CAGGGCGTAGTGGGCTTCGGGGTTGACGTGCTGGGCCTGTACTCGGTCAAGCTCGATGGCGGCAAGGGTACGGGCGGCAC
TCAGTTGCTGCCGATCCACAGCGACGGCCGGCCGGCCGATGATTTCGGGCGCCTGGGCGTGGCAGGCAAGGCGCGGTTTT
CCAAGACCGAACTGAAGGTCGGTGAATGGATGCCAGTGCTGCCGATCCTGCGCTCCGATGACGGTCGCTCGTTGCCGCAG
ACGTTTCGCGGTGGTCAGGTCACGTCCAAGGAGATCGACGGCCTGACCCTGTATGGCGGGCAATTCCGCGGCAACAGCCC
GCGCAACGACGCGAGCATGGAAGACATGTCGCTGAACGGGCGAGGCGCATTCACTTCGGACCGCTTCAACTTCGGCGGCG
GCGAGTATGTCTTCAACGACAAGCTTACTCAGGTAGGCGTCTGGTACTCGGAACTGCAGGACATCTATCAGCAGCAATTC
TTCAACCTGCTGCACAGCCAGCCGCTCGGCGACTGGACCCTGGGCGCGAATCTGGGTTACTTCATCGGCAAGGAAGACGG
CAACAAACTGGCCGGCGACCTGGATAACAAGACGGCCTACGCGCTGCTCTCGGCCCGCTATGGCGGCAGCACCTTCTATG
TCGGCCTGCAAAAACTGACTGGCGACACCGCGTGGATGCGCGTCAACGGCACCAGTGGCGGTACGCTGGCCAACGACAGT
TACAACTCCAGCTACGACAACGCCAAAGAGAAATCCTGGCAACTGCGCCACGACTACAACTTCGCGACGCTGGGCGTACC
CGGCCTGACCCTGATGAACCGCTACATCAGCGGCGACAATGTGCACACCGGCAACATCACCGACGGCAAGGAATGGGGCC
GGGAATCCGAACTGGCCTATACCGTACAAAGCGGTGCGCTGAAGAACCTGAACGTCAAATGGCGCAACTCCAGCCTGCGT
CGCGATTTCAGCACCAACGAATTCGACGAGAATCGCGTGTTCGTCAGCTACCCTATTTCGTTGCTCTGA

Upstream 100 bases:

>100_bases
GCCTGGCGACAGGCATCACGTAATCCTCGAAGGTGTCGGCCGCCGCTTGCGCGCGGCCAGGAAAGGGGAAGGTTTCACTA
AACAAGGGAGCACAACAATA

Downstream 100 bases:

>100_bases
AAGCGGTGGCAGAGCCTGTCGGCGACGGCAGGTTTTGCCTTGTTACAAATGTATCCGGCCAAGGGCGTGCCCAGCCCGTT
TTTAGACCTTGGCCGCGTTG

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTSHTTRSRILLGVGGMTLIFPMLGMAEGFVDDTKATLNLRNAYFNRNFTNPAYPSSAAPQGKAEEWTQSFILDAKSGFT
QGVVGFGVDVLGLYSVKLDGGKGTGGTQLLPIHSDGRPADDFGRLGVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQ
TFRGGQVTSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRGAFTSDRFNFGGGEYVFNDKLTQVGVWYSELQDIYQQQF
FNLLHSQPLGDWTLGANLGYFIGKEDGNKLAGDLDNKTAYALLSARYGGSTFYVGLQKLTGDTAWMRVNGTSGGTLANDS
YNSSYDNAKEKSWQLRHDYNFATLGVPGLTLMNRYISGDNVHTGNITDGKEWGRESELAYTVQSGALKNLNVKWRNSSLR
RDFSTNEFDENRVFVSYPISLL

Sequences:

>Translated_422_residues
MTSHTTRSRILLGVGGMTLIFPMLGMAEGFVDDTKATLNLRNAYFNRNFTNPAYPSSAAPQGKAEEWTQSFILDAKSGFT
QGVVGFGVDVLGLYSVKLDGGKGTGGTQLLPIHSDGRPADDFGRLGVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQ
TFRGGQVTSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRGAFTSDRFNFGGGEYVFNDKLTQVGVWYSELQDIYQQQF
FNLLHSQPLGDWTLGANLGYFIGKEDGNKLAGDLDNKTAYALLSARYGGSTFYVGLQKLTGDTAWMRVNGTSGGTLANDS
YNSSYDNAKEKSWQLRHDYNFATLGVPGLTLMNRYISGDNVHTGNITDGKEWGRESELAYTVQSGALKNLNVKWRNSSLR
RDFSTNEFDENRVFVSYPISLL
>Mature_421_residues
TSHTTRSRILLGVGGMTLIFPMLGMAEGFVDDTKATLNLRNAYFNRNFTNPAYPSSAAPQGKAEEWTQSFILDAKSGFTQ
GVVGFGVDVLGLYSVKLDGGKGTGGTQLLPIHSDGRPADDFGRLGVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQT
FRGGQVTSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRGAFTSDRFNFGGGEYVFNDKLTQVGVWYSELQDIYQQQFF
NLLHSQPLGDWTLGANLGYFIGKEDGNKLAGDLDNKTAYALLSARYGGSTFYVGLQKLTGDTAWMRVNGTSGGTLANDSY
NSSYDNAKEKSWQLRHDYNFATLGVPGLTLMNRYISGDNVHTGNITDGKEWGRESELAYTVQSGALKNLNVKWRNSSLRR
DFSTNEFDENRVFVSYPISLL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 46341; Mature: 46210

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS00309 GALAPTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHTTRSRILLGVGGMTLIFPMLGMAEGFVDDTKATLNLRNAYFNRNFTNPAYPSSAAP
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHEEEEEHHHCCCCCCCCCCCCCCCC
QGKAEEWTQSFILDAKSGFTQGVVGFGVDVLGLYSVKLDGGKGTGGTQLLPIHSDGRPAD
CCCHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCH
DFGRLGVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQVTSKEIDGLTLYGG
HHHCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHCCCCCCHHCCCCEEEECC
QFRGNSPRNDASMEDMSLNGRGAFTSDRFNFGGGEYVFNDKLTQVGVWYSELQDIYQQQF
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
FNLLHSQPLGDWTLGANLGYFIGKEDGNKLAGDLDNKTAYALLSARYGGSTFYVGLQKLT
HHHHHCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECC
GDTAWMRVNGTSGGTLANDSYNSSYDNAKEKSWQLRHDYNFATLGVPGLTLMNRYISGDN
CCEEEEEEECCCCCEECCCCCCCCCCCCHHHCEEEEECCCEEEECCCHHHHHHHHCCCCC
VHTGNITDGKEWGRESELAYTVQSGALKNLNVKWRNSSLRRDFSTNEFDENRVFVSYPIS
EEECCCCCHHHHCCCCCEEEEEECCCEECCEEEECCCCCCCCCCCCCCCCCEEEEECCCC
LL
CC
>Mature Secondary Structure 
TSHTTRSRILLGVGGMTLIFPMLGMAEGFVDDTKATLNLRNAYFNRNFTNPAYPSSAAP
CCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHEEEEEHHHCCCCCCCCCCCCCCCC
QGKAEEWTQSFILDAKSGFTQGVVGFGVDVLGLYSVKLDGGKGTGGTQLLPIHSDGRPAD
CCCHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCH
DFGRLGVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQVTSKEIDGLTLYGG
HHHCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHCCCCCCHHCCCCEEEECC
QFRGNSPRNDASMEDMSLNGRGAFTSDRFNFGGGEYVFNDKLTQVGVWYSELQDIYQQQF
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
FNLLHSQPLGDWTLGANLGYFIGKEDGNKLAGDLDNKTAYALLSARYGGSTFYVGLQKLT
HHHHHCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECC
GDTAWMRVNGTSGGTLANDSYNSSYDNAKEKSWQLRHDYNFATLGVPGLTLMNRYISGDN
CCEEEEEEECCCCCEECCCCCCCCCCCCHHHCEEEEECCCEEEECCCHHHHHHHHCCCCC
VHTGNITDGKEWGRESELAYTVQSGALKNLNVKWRNSSLRRDFSTNEFDENRVFVSYPIS
EEECCCCCHHHHCCCCCEEEEEECCCEECCEEEECCCCCCCCCCCCCCCCCEEEEECCCC
LL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]