| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yheS [H]
Identifier: 66043323
GI number: 66043323
Start: 52475
End: 54385
Strand: Reverse
Name: yheS [H]
Synonym: Psyr_0052
Alternate gene names: 66043323
Gene position: 54385-52475 (Counterclockwise)
Preceding gene: 66043325
Following gene: 66043322
Centisome position: 0.89
GC content: 63.32
Gene sequence:
>1911_bases ATGATTCGACTTCAAAGCCTTACCTTACAGCGTGGTCCGCAACGTCTGCTAGAAGACGCCGAGCTGACTCTGCACGCCGG CCATAAAGCCGGTCTGATCGGTGCCAATGGCGCCGGTAAATCCAGCCTGTTTGCCCTGCTGCGTGGAGAGCTGACGCCGG ACGCCGGCGACTGCCTGCTGCCCGCCGACTGGCGTATCGCGCACATGCGCCAGGAGGTCGACACGCTCGAACGCCTGGCC GTGGATTACGTGCTCGATGGCGACGAGCGCCTGCGCGAGGTACAGAGCTCGCTGGCCGAGGCCGAAGCCGCGCAGGACGG TGCCGCTCAGGCCCGTCTGCATTCGGAGCTCGACAGCGCCGACGGTTATACCGCCGACGCACGCGCTCGCAAGCTGCTGG CCGGGCTGGGCTTCACCAACGAACAGATGGAGCGTCAGGTCGGCAGTTTCTCCGGTGGCTGGCGTATGCGCCTGAACCTG GCGCAGGCATTGATGTGCCCCTCGGACCTGCTGCTGCTCGACGAACCGACCAACCACTTGGACCTCGACGCCATTCTGTG GCTTGAAGACTGGCTCAAGAGTTACCCCGGCACCTTGCTGCTGATTTCCCACGACCGGGATTTTCTGGATGCCGTGGTCG ATCACATCGCCCATGTCGAGCAACGCAGGATCACTCTCTATCGCGGCGGCTACAGCGCCTTCGAGCGGGCTCGTGCCGAA CGTCTGGCCCAGCAGCAACAGGCCTACGAGAAGCAGCAGGCGCAACGTGCGCACATGGAAAAGTACATCGCGCGCTTCAA GGCCCAGGCCACCAAGGCCCGTCAGGCACAAAGCCGGATCAAGGCGCTGGAACGCATGGAAGAGCTGTCGGCCGCGCACG TCGACTCTCCGTTCAACTTCGTCTTCCGTGAGTCCGACAAGATCTCCAGCCCCTTGCTGGACCTGTCCGATGCGCGCCTG GGTTACGGCGACAAGACCATCCTCGAGAAGGTCAAGCTGCAACTCACGCCCGGTGCACGCATCGGCCTGCTGGGTCCGAA CGGCGCAGGCAAGTCGACGCTGATCAAAAACCTCGCCGGCGAGCTTGAGCCGCAAAGCGGTCGGCTGGTGCGTGGCGAAA ACCTCACCGTGGGCTACTTCGCCCAGCATCAGCTCGACTCACTGGACGCCAAGGCGACGCCGTTGCTGCACCTGCAGCGC CTGGCACCGACCGAGCGTGAACAGACCTTGCGCGATTTCCTGGGCGGTTTCGACTTCCGTGGCGCGCGTCTGGATGAGCC GGTGCTGAATTTCTCCGGTGGCGAGAAAGCCCGTCTGGCGCTGGCGCTGATTGCCTGGGAAAAGCCCAATCTGTTGCTGC TCGATGAACCGACCAACCACCTCGACCTGGAGATGCGCCTGGCGCTGACCATGGCCTTGCAGGAGTTCGGTGGCGCGGTA CTGGTGGTGTCTCACGATCGGCACTTGCTCAAGAGCACGACCGATGACTTCCTGCTGGTGGCCGACGGCCGCGTGCAGGC GTTCGACGGCGATCTGGATGACTACACGCGCTGGCTGGCCGATTACCGGCTGCGCAACGCTCCGGTCAGCAACACGCCCG TCAACGCCGACAAGACCGATAAGAAAGCCCAGCGCCAGCAGGCAGCGGCCTTGCGTCAGCAACTGGCGCCGCACAAGCGC GAAGCCGACAAGCTGGAGCGTGATCTCGGGCTGGTGAATGAGAAACTCGCCAAGGTCGAAGAAGCGCTGGCTGACAGCAC CAACTACGAGGCGGCCAACAAGGACAAGCTGCGCGATCTGCTGGCCGAACAGGCGAAGCTGAAAGTGCGCGAAGCCGAGC TGGAAGACGCCTGGATGCAAGCGCTGGAACTGTTGGAATCAATGCAGGCCGAACTGGAAGCATTGTCGTGA
Upstream 100 bases:
>100_bases CACACCCGGTCGGGCGTAGAAATCGAGGGTGAAACTCCAGAGCGCTGAAGGCATAGTGATCCACCTGTTCAGGACGAAGC TGGTAGACTCCGCCGCCATT
Downstream 100 bases:
>100_bases GTGAGGCAGGGAAGTGATGGACATGTTGGGCTTGCCGGTATCCGCGTACTGGCTTGAACCGCTGCTGGTGGGTGCGCAGA TTCTGCTGATCCTGCTGGCC
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MIRLQSLTLQRGPQRLLEDAELTLHAGHKAGLIGANGAGKSSLFALLRGELTPDAGDCLLPADWRIAHMRQEVDTLERLA VDYVLDGDERLREVQSSLAEAEAAQDGAAQARLHSELDSADGYTADARARKLLAGLGFTNEQMERQVGSFSGGWRMRLNL AQALMCPSDLLLLDEPTNHLDLDAILWLEDWLKSYPGTLLLISHDRDFLDAVVDHIAHVEQRRITLYRGGYSAFERARAE RLAQQQQAYEKQQAQRAHMEKYIARFKAQATKARQAQSRIKALERMEELSAAHVDSPFNFVFRESDKISSPLLDLSDARL GYGDKTILEKVKLQLTPGARIGLLGPNGAGKSTLIKNLAGELEPQSGRLVRGENLTVGYFAQHQLDSLDAKATPLLHLQR LAPTEREQTLRDFLGGFDFRGARLDEPVLNFSGGEKARLALALIAWEKPNLLLLDEPTNHLDLEMRLALTMALQEFGGAV LVVSHDRHLLKSTTDDFLLVADGRVQAFDGDLDDYTRWLADYRLRNAPVSNTPVNADKTDKKAQRQQAAALRQQLAPHKR EADKLERDLGLVNEKLAKVEEALADSTNYEAANKDKLRDLLAEQAKLKVREAELEDAWMQALELLESMQAELEALS
Sequences:
>Translated_636_residues MIRLQSLTLQRGPQRLLEDAELTLHAGHKAGLIGANGAGKSSLFALLRGELTPDAGDCLLPADWRIAHMRQEVDTLERLA VDYVLDGDERLREVQSSLAEAEAAQDGAAQARLHSELDSADGYTADARARKLLAGLGFTNEQMERQVGSFSGGWRMRLNL AQALMCPSDLLLLDEPTNHLDLDAILWLEDWLKSYPGTLLLISHDRDFLDAVVDHIAHVEQRRITLYRGGYSAFERARAE RLAQQQQAYEKQQAQRAHMEKYIARFKAQATKARQAQSRIKALERMEELSAAHVDSPFNFVFRESDKISSPLLDLSDARL GYGDKTILEKVKLQLTPGARIGLLGPNGAGKSTLIKNLAGELEPQSGRLVRGENLTVGYFAQHQLDSLDAKATPLLHLQR LAPTEREQTLRDFLGGFDFRGARLDEPVLNFSGGEKARLALALIAWEKPNLLLLDEPTNHLDLEMRLALTMALQEFGGAV LVVSHDRHLLKSTTDDFLLVADGRVQAFDGDLDDYTRWLADYRLRNAPVSNTPVNADKTDKKAQRQQAAALRQQLAPHKR EADKLERDLGLVNEKLAKVEEALADSTNYEAANKDKLRDLLAEQAKLKVREAELEDAWMQALELLESMQAELEALS >Mature_636_residues MIRLQSLTLQRGPQRLLEDAELTLHAGHKAGLIGANGAGKSSLFALLRGELTPDAGDCLLPADWRIAHMRQEVDTLERLA VDYVLDGDERLREVQSSLAEAEAAQDGAAQARLHSELDSADGYTADARARKLLAGLGFTNEQMERQVGSFSGGWRMRLNL AQALMCPSDLLLLDEPTNHLDLDAILWLEDWLKSYPGTLLLISHDRDFLDAVVDHIAHVEQRRITLYRGGYSAFERARAE RLAQQQQAYEKQQAQRAHMEKYIARFKAQATKARQAQSRIKALERMEELSAAHVDSPFNFVFRESDKISSPLLDLSDARL GYGDKTILEKVKLQLTPGARIGLLGPNGAGKSTLIKNLAGELEPQSGRLVRGENLTVGYFAQHQLDSLDAKATPLLHLQR LAPTEREQTLRDFLGGFDFRGARLDEPVLNFSGGEKARLALALIAWEKPNLLLLDEPTNHLDLEMRLALTMALQEFGGAV LVVSHDRHLLKSTTDDFLLVADGRVQAFDGDLDDYTRWLADYRLRNAPVSNTPVNADKTDKKAQRQQAAALRQQLAPHKR EADKLERDLGLVNEKLAKVEEALADSTNYEAANKDKLRDLLAEQAKLKVREAELEDAWMQALELLESMQAELEALS
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=524, Percent_Identity=37.7862595419847, Blast_Score=346, Evalue=4e-95, Organism=Homo sapiens, GI10947137, Length=527, Percent_Identity=35.673624288425, Blast_Score=315, Evalue=8e-86, Organism=Homo sapiens, GI27881506, Length=527, Percent_Identity=35.673624288425, Blast_Score=315, Evalue=9e-86, Organism=Homo sapiens, GI69354671, Length=541, Percent_Identity=34.9353049907579, Blast_Score=261, Evalue=1e-69, Organism=Homo sapiens, GI10947135, Length=541, Percent_Identity=34.9353049907579, Blast_Score=261, Evalue=2e-69, Organism=Homo sapiens, GI108773784, Length=489, Percent_Identity=25.3578732106339, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI108773782, Length=489, Percent_Identity=25.3578732106339, Blast_Score=93, Evalue=1e-18, Organism=Escherichia coli, GI1789751, Length=630, Percent_Identity=55.0793650793651, Blast_Score=689, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=527, Percent_Identity=35.8633776091082, Blast_Score=323, Evalue=3e-89, Organism=Escherichia coli, GI2367384, Length=528, Percent_Identity=32.7651515151515, Blast_Score=254, Evalue=1e-68, Organism=Escherichia coli, GI1787182, Length=634, Percent_Identity=28.8643533123028, Blast_Score=231, Evalue=1e-61, Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=34.8484848484849, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI87081782, Length=544, Percent_Identity=26.2867647058824, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1787758, Length=241, Percent_Identity=27.8008298755187, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=28.6274509803922, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=25.8620689655172, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=28.310502283105, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=28.1553398058252, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788506, Length=556, Percent_Identity=23.3812949640288, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1786698, Length=195, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87081791, Length=348, Percent_Identity=24.4252873563218, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=25.3393665158371, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17553372, Length=530, Percent_Identity=37.1698113207547, Blast_Score=338, Evalue=4e-93, Organism=Caenorhabditis elegans, GI17555318, Length=524, Percent_Identity=34.9236641221374, Blast_Score=312, Evalue=3e-85, Organism=Caenorhabditis elegans, GI17559834, Length=554, Percent_Identity=32.129963898917, Blast_Score=308, Evalue=5e-84, Organism=Caenorhabditis elegans, GI17555800, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=558, Percent_Identity=37.0967741935484, Blast_Score=351, Evalue=2e-97, Organism=Saccharomyces cerevisiae, GI6320874, Length=531, Percent_Identity=34.8399246704331, Blast_Score=308, Evalue=3e-84, Organism=Saccharomyces cerevisiae, GI6325030, Length=387, Percent_Identity=33.0749354005168, Blast_Score=173, Evalue=6e-44, Organism=Saccharomyces cerevisiae, GI6324314, Length=412, Percent_Identity=27.6699029126214, Blast_Score=154, Evalue=5e-38, Organism=Saccharomyces cerevisiae, GI6323278, Length=418, Percent_Identity=27.7511961722488, Blast_Score=144, Evalue=3e-35, Organism=Drosophila melanogaster, GI24666836, Length=527, Percent_Identity=38.7096774193548, Blast_Score=363, Evalue=1e-100, Organism=Drosophila melanogaster, GI24642252, Length=527, Percent_Identity=37.5711574952562, Blast_Score=348, Evalue=5e-96, Organism=Drosophila melanogaster, GI18859989, Length=527, Percent_Identity=37.5711574952562, Blast_Score=348, Evalue=5e-96, Organism=Drosophila melanogaster, GI24641342, Length=540, Percent_Identity=35.1851851851852, Blast_Score=316, Evalue=4e-86, Organism=Drosophila melanogaster, GI116007184, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI221500365, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24661270, Length=194, Percent_Identity=30.4123711340206, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI21355589, Length=194, Percent_Identity=30.4123711340206, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70912; Mature: 70912
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLQSLTLQRGPQRLLEDAELTLHAGHKAGLIGANGAGKSSLFALLRGELTPDAGDCLL CEEECHHHHHCCHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEC PADWRIAHMRQEVDTLERLAVDYVLDGDERLREVQSSLAEAEAAQDGAAQARLHSELDSA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC DGYTADARARKLLAGLGFTNEQMERQVGSFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCEEEEECCCCCC DLDAILWLEDWLKSYPGTLLLISHDRDFLDAVVDHIAHVEQRRITLYRGGYSAFERARAE CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHH RLAQQQQAYEKQQAQRAHMEKYIARFKAQATKARQAQSRIKALERMEELSAAHVDSPFNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE VFRESDKISSPLLDLSDARLGYGDKTILEKVKLQLTPGARIGLLGPNGAGKSTLIKNLAG EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHHH ELEPQSGRLVRGENLTVGYFAQHQLDSLDAKATPLLHLQRLAPTEREQTLRDFLGGFDFR CCCCCCCCEEECCCCEEEEHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCC GARLDEPVLNFSGGEKARLALALIAWEKPNLLLLDEPTNHLDLEMRLALTMALQEFGGAV CCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEE LVVSHDRHLLKSTTDDFLLVADGRVQAFDGDLDDYTRWLADYRLRNAPVSNTPVNADKTD EEEECCCHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH KKAQRQQAAALRQQLAPHKREADKLERDLGLVNEKLAKVEEALADSTNYEAANKDKLRDL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LAEQAKLKVREAELEDAWMQALELLESMQAELEALS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIRLQSLTLQRGPQRLLEDAELTLHAGHKAGLIGANGAGKSSLFALLRGELTPDAGDCLL CEEECHHHHHCCHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEC PADWRIAHMRQEVDTLERLAVDYVLDGDERLREVQSSLAEAEAAQDGAAQARLHSELDSA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC DGYTADARARKLLAGLGFTNEQMERQVGSFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCEEEEECCCCCC DLDAILWLEDWLKSYPGTLLLISHDRDFLDAVVDHIAHVEQRRITLYRGGYSAFERARAE CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHH RLAQQQQAYEKQQAQRAHMEKYIARFKAQATKARQAQSRIKALERMEELSAAHVDSPFNF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE VFRESDKISSPLLDLSDARLGYGDKTILEKVKLQLTPGARIGLLGPNGAGKSTLIKNLAG EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHHH ELEPQSGRLVRGENLTVGYFAQHQLDSLDAKATPLLHLQRLAPTEREQTLRDFLGGFDFR CCCCCCCCEEECCCCEEEEHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCC GARLDEPVLNFSGGEKARLALALIAWEKPNLLLLDEPTNHLDLEMRLALTMALQEFGGAV CCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEE LVVSHDRHLLKSTTDDFLLVADGRVQAFDGDLDDYTRWLADYRLRNAPVSNTPVNADKTD EEEECCCHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH KKAQRQQAAALRQQLAPHKREADKLERDLGLVNEKLAKVEEALADSTNYEAANKDKLRDL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LAEQAKLKVREAELEDAWMQALELLESMQAELEALS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]