Click here to switch to the map view.

The map label for this gene is ocd [H]

Identifier: 62390464

GI number: 62390464

Start: 1675587

End: 1676735

Strand: Reverse

Name: ocd [H]

Synonym: cg1784

Alternate gene names: 62390464

Gene position: 1676735-1675587 (Counterclockwise)

Preceding gene: 62390465

Following gene: 62390463

Centisome position: 51.08

GC content: 58.83

Gene sequence:

>1149_bases
ATGACCGCAACCTACACCACTGAAACCGCCATCAATTTCTTGTTCTTGAGCGAACCGGACATGATCGCGGCCGGAGTCAA
AGACGTCGCGCAATGCGTCGATGTCATGGAGGAAACGCTCGTGCTCTTGGCGCAGGGCGACTACAAAATGGCCGGTTTGA
ACTCCAACTCGCATGGCGCGATGATCACCTTCCCGGAAAACCCAGAATTTGAAGGCATGCCCAAGGACGGCCCCGACCGC
CGATTCATGGCGATGCCCGCATACCTCGGCGGGCGATTCAAAAACACCGGCGTGAAGTGGTACGGATCCAACGCGGAAAA
CAAGGCCTCAGGCTTGCCTCGCTCGATCCACACCTTCGTCCTCAACGACACGGTCACCGGTGCACCGAAGGCCATCATGT
CCGCGAACCTGCTGTCCGCCTACCGCACCGGCGCGGTTCCCGGCGTGGGCGTGAAGCACTTAGCGGTCGCCGACGCGACA
ACCTTGGCTGTCGTCGGACCTGGTGTCATGGCGAAAACCATCACCGAAGCGTGCATCGCAGAGCGCCCAGGAATCACCAC
CATCAAGATCAAGGGACGCAGCGAACGCGGCATCAACGCCTTTGCAACATGGGCGTTGGAAAAATTCCCCGAGATCGAAG
TGGTCGCCGTCGGATCTGAAGAAGACGTGGTCAAAGACGCCGACATCGTCATCGCCGCCACCACCACGGACGCCGCCGGC
TCCTCCGCCTTCCCATACTTCAAAAAAGAATGGCTCAAGCCGGGCGCATTGCTGCTGCTTCCAGCCGCCGGTCGCTTCGA
CGACGCTTATTTGCTTGACGACGCCCGCCTCGTTGTTGACTACATGGGGCTCTACGAAGCCTGGGCAGAAGAATACGGCC
CACAGGCCTACCAACTACTCGGCATTCCAGGAACCCACTGGTACGACCTGGCGCTGCAAGGAAAACTCGACCTTGCAAAG
ATTTCCCAGATTGGCGATATCTGCTCCGGCAAGCTACCCGGACGCACCAACGATGAGGAAATCATCCTCTATTCCGTCGG
CGGCATGCCAGTAGAAGACGTCGCCTGGGCAACCCAAGTGTATGAAAACGCCCTGGAAAAAGGCGTCGGCACCACATTGA
ACCTGTGGGAATCACCCGCACTGGCTTGA

Upstream 100 bases:

>100_bases
GCACCAATTTCGGACCTGAAATCCCCGAGGAAACCGTGCCCGACGCCGTGCAGGTGGGCGTCGATAAGCAAAAAATCGCT
GATACTCGAAAGGCCTCAAA

Downstream 100 bases:

>100_bases
GAGAAGAAACAACAATGAAAATTGCGGTAATCGGCCTTGGATCAACCGGCTCCATGGCACTGTGGCACTTAAGTAACATC
CCAGGTGTAGAGGCCATCGG

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTATYTTETAINFLFLSEPDMIAAGVKDVAQCVDVMEETLVLLAQGDYKMAGLNSNSHGAMITFPENPEFEGMPKDGPDR
RFMAMPAYLGGRFKNTGVKWYGSNAENKASGLPRSIHTFVLNDTVTGAPKAIMSANLLSAYRTGAVPGVGVKHLAVADAT
TLAVVGPGVMAKTITEACIAERPGITTIKIKGRSERGINAFATWALEKFPEIEVVAVGSEEDVVKDADIVIAATTTDAAG
SSAFPYFKKEWLKPGALLLLPAAGRFDDAYLLDDARLVVDYMGLYEAWAEEYGPQAYQLLGIPGTHWYDLALQGKLDLAK
ISQIGDICSGKLPGRTNDEEIILYSVGGMPVEDVAWATQVYENALEKGVGTTLNLWESPALA

Sequences:

>Translated_382_residues
MTATYTTETAINFLFLSEPDMIAAGVKDVAQCVDVMEETLVLLAQGDYKMAGLNSNSHGAMITFPENPEFEGMPKDGPDR
RFMAMPAYLGGRFKNTGVKWYGSNAENKASGLPRSIHTFVLNDTVTGAPKAIMSANLLSAYRTGAVPGVGVKHLAVADAT
TLAVVGPGVMAKTITEACIAERPGITTIKIKGRSERGINAFATWALEKFPEIEVVAVGSEEDVVKDADIVIAATTTDAAG
SSAFPYFKKEWLKPGALLLLPAAGRFDDAYLLDDARLVVDYMGLYEAWAEEYGPQAYQLLGIPGTHWYDLALQGKLDLAK
ISQIGDICSGKLPGRTNDEEIILYSVGGMPVEDVAWATQVYENALEKGVGTTLNLWESPALA
>Mature_381_residues
TATYTTETAINFLFLSEPDMIAAGVKDVAQCVDVMEETLVLLAQGDYKMAGLNSNSHGAMITFPENPEFEGMPKDGPDRR
FMAMPAYLGGRFKNTGVKWYGSNAENKASGLPRSIHTFVLNDTVTGAPKAIMSANLLSAYRTGAVPGVGVKHLAVADATT
LAVVGPGVMAKTITEACIAERPGITTIKIKGRSERGINAFATWALEKFPEIEVVAVGSEEDVVKDADIVIAATTTDAAGS
SAFPYFKKEWLKPGALLLLPAAGRFDDAYLLDDARLVVDYMGLYEAWAEEYGPQAYQLLGIPGTHWYDLALQGKLDLAKI
SQIGDICSGKLPGRTNDEEIILYSVGGMPVEDVAWATQVYENALEKGVGTTLNLWESPALA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 40957; Mature: 40826

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATYTTETAINFLFLSEPDMIAAGVKDVAQCVDVMEETLVLLAQGDYKMAGLNSNSHGA
CCCEEECHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCE
MITFPENPEFEGMPKDGPDRRFMAMPAYLGGRFKNTGVKWYGSNAENKASGLPRSIHTFV
EEECCCCCCCCCCCCCCCCCEEEECHHHHCCEEECCCEEEECCCCCCHHCCCCCEEEEEE
LNDTVTGAPKAIMSANLLSAYRTGAVPGVGVKHLAVADATTLAVVGPGVMAKTITEACIA
EECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCEEEEECCCHHHHHHHHHHHH
ERPGITTIKIKGRSERGINAFATWALEKFPEIEVVAVGSEEDVVKDADIVIAATTTDAAG
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCC
SSAFPYFKKEWLKPGALLLLPAAGRFDDAYLLDDARLVVDYMGLYEAWAEEYGPQAYQLL
CCCCCHHHHHHCCCCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEE
GIPGTHWYDLALQGKLDLAKISQIGDICSGKLPGRTNDEEIILYSVGGMPVEDVAWATQV
ECCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
YENALEKGVGTTLNLWESPALA
HHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure 
TATYTTETAINFLFLSEPDMIAAGVKDVAQCVDVMEETLVLLAQGDYKMAGLNSNSHGA
CCEEECHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCE
MITFPENPEFEGMPKDGPDRRFMAMPAYLGGRFKNTGVKWYGSNAENKASGLPRSIHTFV
EEECCCCCCCCCCCCCCCCCEEEECHHHHCCEEECCCEEEECCCCCCHHCCCCCEEEEEE
LNDTVTGAPKAIMSANLLSAYRTGAVPGVGVKHLAVADATTLAVVGPGVMAKTITEACIA
EECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCEEEEECCCHHHHHHHHHHHH
ERPGITTIKIKGRSERGINAFATWALEKFPEIEVVAVGSEEDVVKDADIVIAATTTDAAG
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCC
SSAFPYFKKEWLKPGALLLLPAAGRFDDAYLLDDARLVVDYMGLYEAWAEEYGPQAYQLL
CCCCCHHHHHHCCCCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEE
GIPGTHWYDLALQGKLDLAKISQIGDICSGKLPGRTNDEEIILYSVGGMPVEDVAWATQV
ECCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
YENALEKGVGTTLNLWESPALA
HHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]