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The map label for this gene is ygdH [C]

Identifier: 62390000

GI number: 62390000

Start: 1158370

End: 1159140

Strand: Direct

Name: ygdH [C]

Synonym: cg1261

Alternate gene names: 62390000

Gene position: 1158370-1159140 (Clockwise)

Preceding gene: 62389999

Following gene: 62390001

Centisome position: 35.29

GC content: 53.05

Gene sequence:

>771_bases
ATGGCTCCTAAACAAACTCCCAGCCCAGAGAAGAATCGAAACCTGGTGGGACCAGTTCTGCAACGTCGGCAGACAGAGGG
TACTTTTGATCAACGCTTGCTAGAAATGCGCGCTGATCACAATTGGAAGCACGCCGATCCATGGCGTGTACTGCGTATTC
AGTCTGAGTTTGTGGCGGGTTTTGATGCCCTCCACGAGATGCCAAAGGCCGTAACCGTCTTTGGTTCCGCACGCATTAAA
GAGGATCACCCGTACTACAAGGCGGGTGTAGAACTTGGTGAAAAGCTCGTTGCAGCGGACTACGCAGTTGTCACCGGTGG
CGGTCCAGGTCTGATGGAAGCCCCCAATAAGGGGGCAAGCGAGGCCAATGGTTTATCAGTTGGTCTGGGCATTGAGTTGC
CACATGAACAGCATCTGAACCCTTATGTGGATTTGGGTCTGAACTTCCGGTACTTCTTCGCACGCAAGACCATGTTCCTG
AAATACTCCCAGGCTTTTGTGTGTCTGCCTGGTGGTTTCGGCACGCTCGATGAGCTTTTCGAGGTCCTCTGCATGGTACA
AACCGGCAAGGTAACCAACTTTCCCATCGTGCTGATCGGCACTGAGTTCTGGGCAGGTTTGGTGGATTGGATCCGTCACC
GCCTGGTAGAGGAAGGCATGATCGATGAGAAGGATGTTGACCGGATGTTGGTCACTGATGACCTGGATCAGGCCGTCAAA
TTCATCGTCGATGCACACGCTGGATTGGACGTAGCGCGTCGCCACAATTAA

Upstream 100 bases:

>100_bases
GATGTGGCAGCAATTTTGAAGCAGTACCTGAGCGAGTAACCGCATTCGGGGTTATCGTGGGACTTCCGAAATGTAACTAG
AGACTAGAGGAGGAAACACG

Downstream 100 bases:

>100_bases
GCAGTGGCTACATTAGGTGTTATGAGTTCTTTGCCGGTCATCATGGCCATCGTCAATCGCACCCCGGATTCTTTCTATGA
CAAGGGTGCGACATTTGAGG

Product: lysine decarboxylase family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MAPKQTPSPEKNRNLVGPVLQRRQTEGTFDQRLLEMRADHNWKHADPWRVLRIQSEFVAGFDALHEMPKAVTVFGSARIK
EDHPYYKAGVELGEKLVAADYAVVTGGGPGLMEAPNKGASEANGLSVGLGIELPHEQHLNPYVDLGLNFRYFFARKTMFL
KYSQAFVCLPGGFGTLDELFEVLCMVQTGKVTNFPIVLIGTEFWAGLVDWIRHRLVEEGMIDEKDVDRMLVTDDLDQAVK
FIVDAHAGLDVARRHN

Sequences:

>Translated_256_residues
MAPKQTPSPEKNRNLVGPVLQRRQTEGTFDQRLLEMRADHNWKHADPWRVLRIQSEFVAGFDALHEMPKAVTVFGSARIK
EDHPYYKAGVELGEKLVAADYAVVTGGGPGLMEAPNKGASEANGLSVGLGIELPHEQHLNPYVDLGLNFRYFFARKTMFL
KYSQAFVCLPGGFGTLDELFEVLCMVQTGKVTNFPIVLIGTEFWAGLVDWIRHRLVEEGMIDEKDVDRMLVTDDLDQAVK
FIVDAHAGLDVARRHN
>Mature_255_residues
APKQTPSPEKNRNLVGPVLQRRQTEGTFDQRLLEMRADHNWKHADPWRVLRIQSEFVAGFDALHEMPKAVTVFGSARIKE
DHPYYKAGVELGEKLVAADYAVVTGGGPGLMEAPNKGASEANGLSVGLGIELPHEQHLNPYVDLGLNFRYFFARKTMFLK
YSQAFVCLPGGFGTLDELFEVLCMVQTGKVTNFPIVLIGTEFWAGLVDWIRHRLVEEGMIDEKDVDRMLVTDDLDQAVKF
IVDAHAGLDVARRHN

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28691; Mature: 28560

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPKQTPSPEKNRNLVGPVLQRRQTEGTFDQRLLEMRADHNWKHADPWRVLRIQSEFVAG
CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHH
FDALHEMPKAVTVFGSARIKEDHPYYKAGVELGEKLVAADYAVVTGGGPGLMEAPNKGAS
HHHHHHCCHHEEEECCCEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
EANGLSVGLGIELPHEQHLNPYVDLGLNFRYFFARKTMFLKYSQAFVCLPGGFGTLDELF
CCCCEEEEEEEECCCHHCCCCEEECCCCEEEEEHHHHHEEEECCEEEECCCCCCCHHHHH
EVLCMVQTGKVTNFPIVLIGTEFWAGLVDWIRHRLVEEGMIDEKDVDRMLVTDDLDQAVK
HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHCCEEECCCHHHHHH
FIVDAHAGLDVARRHN
HHHHHCCCCCHHHCCC
>Mature Secondary Structure 
APKQTPSPEKNRNLVGPVLQRRQTEGTFDQRLLEMRADHNWKHADPWRVLRIQSEFVAG
CCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHH
FDALHEMPKAVTVFGSARIKEDHPYYKAGVELGEKLVAADYAVVTGGGPGLMEAPNKGAS
HHHHHHCCHHEEEECCCEECCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
EANGLSVGLGIELPHEQHLNPYVDLGLNFRYFFARKTMFLKYSQAFVCLPGGFGTLDELF
CCCCEEEEEEEECCCHHCCCCEEECCCCEEEEEHHHHHEEEECCEEEECCCCCCCHHHHH
EVLCMVQTGKVTNFPIVLIGTEFWAGLVDWIRHRLVEEGMIDEKDVDRMLVTDDLDQAVK
HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHCCEEECCCHHHHHH
FIVDAHAGLDVARRHN
HHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA