Click here to switch to the map view.

The map label for this gene is yrbH [C]

Identifier: 62184858

GI number: 62184858

Start: 235769

End: 236758

Strand: Direct

Name: yrbH [C]

Synonym: CAB215

Alternate gene names: 62184858

Gene position: 235769-236758 (Clockwise)

Preceding gene: 62184857

Following gene: 62184863

Centisome position: 20.6

GC content: 41.72

Gene sequence:

>990_bases
ATGCGCTCTCCCACAACATCTATTGATCTATGCCAAGATATTGTCAGTAAGCAAAGGGAATCTTTAGAACGTTTTTTTGG
TGCTTTTCAGTGTGAGGATACTTGGGTATTAGCTGAGAAGATATTACATCACCAGGGTTCGATATTTTTTTCTGGTGTAG
GAAAAAGTGGTTGTATCGCAAGGAAAATCGTCGCTACTTTACAGTCTTTTGGAGAGCACGCTCTTTTCCTAGCTTCTGGC
GATCTCCTACACGGGGATCTTGGCGTTGTTCGTCCTGGAGATATCGTCTGTCTTTTTTCTAAGAGTGGAGAAACTCGCGA
GCTTTTAGAATGTATCCCTTATTTAAAGGAGCGAGGCGTATTTATTGCAGGAATTACCTCAGCGACTTATTCGAGTTTAG
CCGTTCTTTGTGATCACGTCGTTATCTTACCTATGATCGAAGAATTAGATCCTTTTAATCTTGTGCCTACAACATCAACG
ACATGCCAACTACTTTTTGGTGATCTTTTAGCGATTACTTTATTGCGTAGTCGGCAAATCTCTCTCGCTGATTACGGGAA
GAACCATCCAGGCGGTCAGATTGGTCTTAAGGTTATTGGTAAAATTCGGGATTATATGTTCCTAAAAACAGAAGTTCCTT
TTTGTTCTCCTGAAGACACCATCGCAGATTCTTTGGACATCTTTTCTTCTTATGGTTGTGGCTGTGTGTGTATAGTGAAC
GAGAAGTTTGAAATATTAGGGATCTTCACAGATGGAGATTTACGCAGAGCATTAGCGCGTCATGGAGGCGATATTCTCTC
TCAGAGACTTCAAGATGTCATGACACCAAATCCTCGAGTGATTAGTGAAGATGCTGATGTGCTTCTTGGCTTACAAATGA
TGGAAACAGGGAGTCCTGTGACCATTTTACCCGTAGTAGATGCTAAGGATCAGAAGTATGTGGTAGGATTGCTTCAGATG
CATACCTTGGCAAAAGCAGGTCTCATCTAA

Upstream 100 bases:

>100_bases
TGATGGTATTTACGGTAGTGAATTTTTAACCTCATTGAAAAATCGGTTAGAGTCTGTTACGATGAGCTAACACACAACGA
TTTTTCTGAGGACTCAAGGG

Downstream 100 bases:

>100_bases
AAAATAAAAATATCGGAAGAGAGGGTAAGCTGGATTCTGTCTACAAGATGAGAAAACTCATCTTGAGGGCAACCATTCAT
CTAGGGGATATATTACTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MRSPTTSIDLCQDIVSKQRESLERFFGAFQCEDTWVLAEKILHHQGSIFFSGVGKSGCIARKIVATLQSFGEHALFLASG
DLLHGDLGVVRPGDIVCLFSKSGETRELLECIPYLKERGVFIAGITSATYSSLAVLCDHVVILPMIEELDPFNLVPTTST
TCQLLFGDLLAITLLRSRQISLADYGKNHPGGQIGLKVIGKIRDYMFLKTEVPFCSPEDTIADSLDIFSSYGCGCVCIVN
EKFEILGIFTDGDLRRALARHGGDILSQRLQDVMTPNPRVISEDADVLLGLQMMETGSPVTILPVVDAKDQKYVVGLLQM
HTLAKAGLI

Sequences:

>Translated_329_residues
MRSPTTSIDLCQDIVSKQRESLERFFGAFQCEDTWVLAEKILHHQGSIFFSGVGKSGCIARKIVATLQSFGEHALFLASG
DLLHGDLGVVRPGDIVCLFSKSGETRELLECIPYLKERGVFIAGITSATYSSLAVLCDHVVILPMIEELDPFNLVPTTST
TCQLLFGDLLAITLLRSRQISLADYGKNHPGGQIGLKVIGKIRDYMFLKTEVPFCSPEDTIADSLDIFSSYGCGCVCIVN
EKFEILGIFTDGDLRRALARHGGDILSQRLQDVMTPNPRVISEDADVLLGLQMMETGSPVTILPVVDAKDQKYVVGLLQM
HTLAKAGLI
>Mature_329_residues
MRSPTTSIDLCQDIVSKQRESLERFFGAFQCEDTWVLAEKILHHQGSIFFSGVGKSGCIARKIVATLQSFGEHALFLASG
DLLHGDLGVVRPGDIVCLFSKSGETRELLECIPYLKERGVFIAGITSATYSSLAVLCDHVVILPMIEELDPFNLVPTTST
TCQLLFGDLLAITLLRSRQISLADYGKNHPGGQIGLKVIGKIRDYMFLKTEVPFCSPEDTIADSLDIFSSYGCGCVCIVN
EKFEILGIFTDGDLRRALARHGGDILSQRLQDVMTPNPRVISEDADVLLGLQMMETGSPVTILPVVDAKDQKYVVGLLQM
HTLAKAGLI

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=318, Percent_Identity=32.7044025157233, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI87082151, Length=292, Percent_Identity=30.8219178082192, Blast_Score=157, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 35956; Mature: 35956

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPTTSIDLCQDIVSKQRESLERFFGAFQCEDTWVLAEKILHHQGSIFFSGVGKSGCIA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHH
RKIVATLQSFGEHALFLASGDLLHGDLGVVRPGDIVCLFSKSGETRELLECIPYLKERGV
HHHHHHHHHCCCCEEEEECCCEEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHCCE
FIAGITSATYSSLAVLCDHVVILPMIEELDPFNLVPTTSTTCQLLFGDLLAITLLRSRQI
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
SLADYGKNHPGGQIGLKVIGKIRDYMFLKTEVPFCSPEDTIADSLDIFSSYGCGCVCIVN
CHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
EKFEILGIFTDGDLRRALARHGGDILSQRLQDVMTPNPRVISEDADVLLGLQMMETGSPV
CCEEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEECCCCHHHEEHHHHCCCCCE
TILPVVDAKDQKYVVGLLQMHTLAKAGLI
EEEEEECCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSPTTSIDLCQDIVSKQRESLERFFGAFQCEDTWVLAEKILHHQGSIFFSGVGKSGCIA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHH
RKIVATLQSFGEHALFLASGDLLHGDLGVVRPGDIVCLFSKSGETRELLECIPYLKERGV
HHHHHHHHHCCCCEEEEECCCEEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHCCE
FIAGITSATYSSLAVLCDHVVILPMIEELDPFNLVPTTSTTCQLLFGDLLAITLLRSRQI
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
SLADYGKNHPGGQIGLKVIGKIRDYMFLKTEVPFCSPEDTIADSLDIFSSYGCGCVCIVN
CHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
EKFEILGIFTDGDLRRALARHGGDILSQRLQDVMTPNPRVISEDADVLLGLQMMETGSPV
CCEEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEECCCCHHHEEHHHHCCCCCE
TILPVVDAKDQKYVVGLLQMHTLAKAGLI
EEEEEECCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9784136 [H]