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The map label for this gene is rpoE5

Identifier: 59713105

GI number: 59713105

Start: 2801405

End: 2801971

Strand: Direct

Name: rpoE5

Synonym: VF_2498

Alternate gene names: NA

Gene position: 2801405-2801971 (Clockwise)

Preceding gene: 59713104

Following gene: 59713106

Centisome position: 96.68

GC content: 38.1

Gene sequence:

>567_bases
ATGAAAACAACAACAGAACTGACACGCATTATTCAAGATTGGCAAGCAGGAAATAAACAAGCTGAAAACCAGTTATATCA
ATTCGCTTATTTACAGCTCAGACATATCGCTCAAGAAGAGCGAAAACGTAACGCTGAAAAATTCGGCCAACATAATGATG
TTCTGACTGACAGCGTAAATAGCACAACCGCTTTGATTCACGACGCTTACCTTAAGCTTTCAAACTCAGAGCTAAGTGAT
GTAAAAACCAAACGCGATTTCTTTTTAATGGCCACCAAAGTGATGCGCCAAATCTTGATCGACAATGCCCGTTCACAACA
AGCTCAAAAGCGTCAGGCGCTAACCTCAATTCAAGATGATAATGATAAATTTGAACAATTGATCATTATGGATAAAGCAC
TTGATAGCTTTAGTGTGCGCTATCCCCGCCAATCAAATGCTCTAAAGTTAAAATATCTTATGGGTATGAAAAACAATGAA
ATTTGCCAACTTTTAGAATGCAGCTCAAGCCTAATAGAGAAAGATTTAAAATTCTCTCGCAGCTGGCTTCAAACTCGTAT
GATGTAA

Upstream 100 bases:

>100_bases
TCTATCGCTATCGACAAACACTTCAACGCCAGCCAAATGGTATTGAAACTATGGATACATTTTCTGTCTCTGAATTTAGC
AAAATATAACGGAATTAGTC

Downstream 100 bases:

>100_bases
TTACTAATGAAAAAAAAAGCACTCATTCTATTATCAATAAGTACTATTGCTTTAAGTGGTTTTTGGTTGCGCTCTGCTAT
TTCGTCACCATCCGAACATA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor; Sigma Factor ECF-Like Family Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKTTTELTRIIQDWQAGNKQAENQLYQFAYLQLRHIAQEERKRNAEKFGQHNDVLTDSVNSTTALIHDAYLKLSNSELSD
VKTKRDFFLMATKVMRQILIDNARSQQAQKRQALTSIQDDNDKFEQLIIMDKALDSFSVRYPRQSNALKLKYLMGMKNNE
ICQLLECSSSLIEKDLKFSRSWLQTRMM

Sequences:

>Translated_188_residues
MKTTTELTRIIQDWQAGNKQAENQLYQFAYLQLRHIAQEERKRNAEKFGQHNDVLTDSVNSTTALIHDAYLKLSNSELSD
VKTKRDFFLMATKVMRQILIDNARSQQAQKRQALTSIQDDNDKFEQLIIMDKALDSFSVRYPRQSNALKLKYLMGMKNNE
ICQLLECSSSLIEKDLKFSRSWLQTRMM
>Mature_188_residues
MKTTTELTRIIQDWQAGNKQAENQLYQFAYLQLRHIAQEERKRNAEKFGQHNDVLTDSVNSTTALIHDAYLKLSNSELSD
VKTKRDFFLMATKVMRQILIDNARSQQAQKRQALTSIQDDNDKFEQLIIMDKALDSFSVRYPRQSNALKLKYLMGMKNNE
ICQLLECSSSLIEKDLKFSRSWLQTRMM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22019; Mature: 22019

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTTELTRIIQDWQAGNKQAENQLYQFAYLQLRHIAQEERKRNAEKFGQHNDVLTDSVN
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC
STTALIHDAYLKLSNSELSDVKTKRDFFLMATKVMRQILIDNARSQQAQKRQALTSIQDD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
NDKFEQLIIMDKALDSFSVRYPRQSNALKLKYLMGMKNNEICQLLECSSSLIEKDLKFSR
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
SWLQTRMM
HHHHHHCC
>Mature Secondary Structure
MKTTTELTRIIQDWQAGNKQAENQLYQFAYLQLRHIAQEERKRNAEKFGQHNDVLTDSVN
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC
STTALIHDAYLKLSNSELSDVKTKRDFFLMATKVMRQILIDNARSQQAQKRQALTSIQDD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
NDKFEQLIIMDKALDSFSVRYPRQSNALKLKYLMGMKNNEICQLLECSSSLIEKDLKFSR
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
SWLQTRMM
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA