| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59713104
Identifier: 59713104
GI number: 59713104
Start: 2799966
End: 2801393
Strand: Direct
Name: 59713104
Synonym: VF_2497
Alternate gene names: NA
Gene position: 2799966-2801393 (Clockwise)
Preceding gene: 59713103
Following gene: 59713105
Centisome position: 96.63
GC content: 37.89
Gene sequence:
>1428_bases ATGAAAAACAAACCGTTTTCAGCTCTTTTATTGATGCTATTTCTAGGCACTCCTTCTGTTGCTCATGCAGAAATAAAAAC GGGATATTTCATCGACTCACCAGTTACTGGTCTTTATTACCAAACAAGCTCACAACTGTCTGGAACGACAAATAAAGGGG CTTTTGAGTATCGAACTGGTGATGTGGTGCGTTTTTTCTTAGGTACTGATGAAAATGGTTATCTTATTAGTACACTATCA GGCCAAGAAGTAGTTACCCCAACGTTAGCCACCACAACACCAAGTAAAAGTATTAATTTAACTCGGTTATTGCTCTCTCT TGATAGTTCACCAAGCAACCGAGATGAAATCACTCTAGCAAGTAAGATGCTTTCTAACGTGGATTTTCAACAACGACTTA AACAAATCGATCTCAATGTATTAGACAGTTCTTCTAAAGAGCTAAATATTGATCTCGTTTCAGTAAAAGAAGCCGTTGAA CACTTAAATCTAAGCCAGCAATACATCGAAGATAATTTCACTTCCGATGACATTATTTATCAGCCAGTCAATAAACATCT AAAACACATCATCATTAAGAAAAAAGACTGGCAAGGTCGAATGTGTGCTTACGACATTAAATATCAGCATCACCCAAGAT ATCGCCCTTCTTTTGGCAATATGGAATATACGGTGACAAATACTCACCTTATCCAATACCCAAGCGCTGGTGATTACTTT AATGGCTGTGAATTAGATACCAGTCTCCCTGTGATCGCAAACAAAAGTCCTATCTCTGAATTTGAAGGCTTTGGCGGAAT GATCGGATGTGCCCCAACAGGATGCACACGTAATGACCTTAATGGGTTTACGTTAGACGACTATAACGACGAAGGTGACT GGAAATACCGAACCATCGCTATGAATTTTGATCCTGAAACTGAATTAATGATGGAAAAAATTCAAGGGTTAGGTCCTAAC GAACACGTGCGCCATCAAAATAGAGGTGAACAAATTGCTTTTATTTATCCGATAGATAAAGAAGAAAAAATCCCTTTTGA AGGCATATGGCAACAAACGCAATATCACGGTCAAAAAATCGAAAAACACTGTTTATTAGTCAAAAATCATCAAGTTCTTA AGCACCCAAAAACAGGTAAAACCTGCTCAAAAAATGAAGAACAGTACACATTGAATGTGACTAAAGACTACGCCGATATG TGGTGGGTAAACAATAAAGATAATAATGCTCGACTAGAACAAATGAATTTATTGGTTCGTTGGTATCTCAACGGAAATCA GGTTCAACACACAACATGGGAGTATTTACCCGCAGGTAGAGATTGGAAGCAAGGGGTTCTCTATCGCTATCGACAAACAC TTCAACGCCAGCCAAATGGTATTGAAACTATGGATACATTTTCTGTCTCTGAATTTAGCAAAATATAA
Upstream 100 bases:
>100_bases TATTGGCCATGATGACGCCGATCCCAACAAAACAGAAATTAACCACTCATCATTTCACTAATAATAATTAAATTCTCGTT TAGAAAAGGACATTCATAAT
Downstream 100 bases:
>100_bases CGGAATTAGTCATGAAAACAACAACAGAACTGACACGCATTATTCAAGATTGGCAAGCAGGAAATAAACAAGCTGAAAAC CAGTTATATCAATTCGCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MKNKPFSALLLMLFLGTPSVAHAEIKTGYFIDSPVTGLYYQTSSQLSGTTNKGAFEYRTGDVVRFFLGTDENGYLISTLS GQEVVTPTLATTTPSKSINLTRLLLSLDSSPSNRDEITLASKMLSNVDFQQRLKQIDLNVLDSSSKELNIDLVSVKEAVE HLNLSQQYIEDNFTSDDIIYQPVNKHLKHIIIKKKDWQGRMCAYDIKYQHHPRYRPSFGNMEYTVTNTHLIQYPSAGDYF NGCELDTSLPVIANKSPISEFEGFGGMIGCAPTGCTRNDLNGFTLDDYNDEGDWKYRTIAMNFDPETELMMEKIQGLGPN EHVRHQNRGEQIAFIYPIDKEEKIPFEGIWQQTQYHGQKIEKHCLLVKNHQVLKHPKTGKTCSKNEEQYTLNVTKDYADM WWVNNKDNNARLEQMNLLVRWYLNGNQVQHTTWEYLPAGRDWKQGVLYRYRQTLQRQPNGIETMDTFSVSEFSKI
Sequences:
>Translated_475_residues MKNKPFSALLLMLFLGTPSVAHAEIKTGYFIDSPVTGLYYQTSSQLSGTTNKGAFEYRTGDVVRFFLGTDENGYLISTLS GQEVVTPTLATTTPSKSINLTRLLLSLDSSPSNRDEITLASKMLSNVDFQQRLKQIDLNVLDSSSKELNIDLVSVKEAVE HLNLSQQYIEDNFTSDDIIYQPVNKHLKHIIIKKKDWQGRMCAYDIKYQHHPRYRPSFGNMEYTVTNTHLIQYPSAGDYF NGCELDTSLPVIANKSPISEFEGFGGMIGCAPTGCTRNDLNGFTLDDYNDEGDWKYRTIAMNFDPETELMMEKIQGLGPN EHVRHQNRGEQIAFIYPIDKEEKIPFEGIWQQTQYHGQKIEKHCLLVKNHQVLKHPKTGKTCSKNEEQYTLNVTKDYADM WWVNNKDNNARLEQMNLLVRWYLNGNQVQHTTWEYLPAGRDWKQGVLYRYRQTLQRQPNGIETMDTFSVSEFSKI >Mature_475_residues MKNKPFSALLLMLFLGTPSVAHAEIKTGYFIDSPVTGLYYQTSSQLSGTTNKGAFEYRTGDVVRFFLGTDENGYLISTLS GQEVVTPTLATTTPSKSINLTRLLLSLDSSPSNRDEITLASKMLSNVDFQQRLKQIDLNVLDSSSKELNIDLVSVKEAVE HLNLSQQYIEDNFTSDDIIYQPVNKHLKHIIIKKKDWQGRMCAYDIKYQHHPRYRPSFGNMEYTVTNTHLIQYPSAGDYF NGCELDTSLPVIANKSPISEFEGFGGMIGCAPTGCTRNDLNGFTLDDYNDEGDWKYRTIAMNFDPETELMMEKIQGLGPN EHVRHQNRGEQIAFIYPIDKEEKIPFEGIWQQTQYHGQKIEKHCLLVKNHQVLKHPKTGKTCSKNEEQYTLNVTKDYADM WWVNNKDNNARLEQMNLLVRWYLNGNQVQHTTWEYLPAGRDWKQGVLYRYRQTLQRQPNGIETMDTFSVSEFSKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54572; Mature: 54572
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKPFSALLLMLFLGTPSVAHAEIKTGYFIDSPVTGLYYQTSSQLSGTTNKGAFEYRTG CCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCEEEEECCCCCCCCCCCCEEEEECC DVVRFFLGTDENGYLISTLSGQEVVTPTLATTTPSKSINLTRLLLSLDSSPSNRDEITLA CEEEEEEECCCCCEEEEECCCCEEECCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHH SKMLSNVDFQQRLKQIDLNVLDSSSKELNIDLVSVKEAVEHLNLSQQYIEDNFTSDDIIY HHHHHCCCHHHHHHHCCCEEECCCCCEEEEEEEHHHHHHHHCCCHHHHHHCCCCCCCEEE QPVNKHLKHIIIKKKDWQGRMCAYDIKYQHHPRYRPSFGNMEYTVTNTHLIQYPSAGDYF CHHHHHHHEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECEEEEECCCCCCCC NGCELDTSLPVIANKSPISEFEGFGGMIGCAPTGCTRNDLNGFTLDDYNDEGDWKYRTIA CCCCCCCCCCEEECCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE MNFDPETELMMEKIQGLGPNEHVRHQNRGEQIAFIYPIDKEEKIPFEGIWQQTQYHGQKI ECCCCHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH EKHCLLVKNHQVLKHPKTGKTCSKNEEQYTLNVTKDYADMWWVNNKDNNARLEQMNLLVR HHHEEEEECCHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHEEEEEEE WYLNGNQVQHTTWEYLPAGRDWKQGVLYRYRQTLQRQPNGIETMDTFSVSEFSKI EEECCCEEEECCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHCC >Mature Secondary Structure MKNKPFSALLLMLFLGTPSVAHAEIKTGYFIDSPVTGLYYQTSSQLSGTTNKGAFEYRTG CCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCEEEEECCCCCCCCCCCCEEEEECC DVVRFFLGTDENGYLISTLSGQEVVTPTLATTTPSKSINLTRLLLSLDSSPSNRDEITLA CEEEEEEECCCCCEEEEECCCCEEECCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHH SKMLSNVDFQQRLKQIDLNVLDSSSKELNIDLVSVKEAVEHLNLSQQYIEDNFTSDDIIY HHHHHCCCHHHHHHHCCCEEECCCCCEEEEEEEHHHHHHHHCCCHHHHHHCCCCCCCEEE QPVNKHLKHIIIKKKDWQGRMCAYDIKYQHHPRYRPSFGNMEYTVTNTHLIQYPSAGDYF CHHHHHHHEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECEEEEECCCCCCCC NGCELDTSLPVIANKSPISEFEGFGGMIGCAPTGCTRNDLNGFTLDDYNDEGDWKYRTIA CCCCCCCCCCEEECCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE MNFDPETELMMEKIQGLGPNEHVRHQNRGEQIAFIYPIDKEEKIPFEGIWQQTQYHGQKI ECCCCHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH EKHCLLVKNHQVLKHPKTGKTCSKNEEQYTLNVTKDYADMWWVNNKDNNARLEQMNLLVR HHHEEEEECCHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHEEEEEEE WYLNGNQVQHTTWEYLPAGRDWKQGVLYRYRQTLQRQPNGIETMDTFSVSEFSKI EEECCCEEEECCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA