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The map label for this gene is yfjD [C]

Identifier: 59713005

GI number: 59713005

Start: 2685444

End: 2686514

Strand: Direct

Name: yfjD [C]

Synonym: VF_2398

Alternate gene names: 59713005

Gene position: 2685444-2686514 (Clockwise)

Preceding gene: 59713002

Following gene: 59713007

Centisome position: 92.68

GC content: 39.22

Gene sequence:

>1071_bases
ATGTTAATTTTATCCATCTATATAGCCATTTCTATTGGTGTTTCTTTCATTTGTTCGGTATTAGAAGCGATTCTTCTTAG
TATCAGCCCAAGCTACCTTGCAAAATTACGACAAGAAAACCACCCCGCTGCACCTCGATTAACAGCATTAAAAGATAATG
TTGATCGTCCTTTATCATCAATTTTAACGCTAAATACGATAGCTCACACCGCTGGTGCTGCTGCATCTGGTGCTCAAGCA
TCAATTGTTTTTGGTAGTGAATGGTTAGGTGTTTTTTCAGCTTTCCTAACTTTTGCCATTTTATTGTTCTCTGAAATTGT
TCCAAAGACAATCGGAGCAACTTACTGGCGTCAACTTGCTCCTATGGCAGCGACAATGCTTCATTGGATGGTGTTATTGC
TAAGTCCAGTGGTTTGGATGTCAGAACAAATTACAAAACGACTTTCTCGTGGCCATCAAGCACCAAAATTGCGTGATGAA
ATTACAGCCATGGCGACATTGGCAAAAGAAAATGGTGAATTTGCAGAAGGTGAGTCAAAAATATTAAACAACATTCTTAA
TATTCAAGATGTGCCTGTTACCCAAGTAATGACACCAAGAACGGTATTATTTCGTGTTAACGCCGAAATGACGGTGGAAC
AATTCTTAGAAAACCATTCAGATACACCGTTTTCACGTCCATTAGTTTACAGTGAAGATAGTGATAACATCATTGGCTTT
ACGCACCGCTTAGAACTTTTCTCAGCAATGCGTAAAGGGCAAGGTGAACGACCTCTTGGTGCGATGATGCGTCCAATTCA
GGTTGTGATAAGTACTTCAACACTACCAAAAGCTTTTGAGCAACTAATGAAACACAGAGCACAACTAGCATTAGTTATTG
ACGAGTACGGTACCGTTCAAGGCTTATTAACACTAGAAGATATCTTTGAATACATGGTCGGCGAAGAAATTATCGATGAA
GCAGACAAAACAACCGATATGCAGCAACTTGCTCAACAACGTTGGACAAATTGGAAAAACAAGCATGGTGTAATCGATAA
TACCGATACTGAAGAAGAAGAGAAAGAATAA

Upstream 100 bases:

>100_bases
CGTCTCACAATTTGTTACTATTTTTCATTAATGAGTCATTGTATTTTGGTTATTCCGTACCCATTTTATAGTGGCTTGCT
TATTTTTTTTGAGATTAATA

Downstream 100 bases:

>100_bases
TAAAAGGTGTTAGCAAGCCCCTTTTAACAAACAAAAAAAACCGATGAGCAATCATCGGTTTTTTTATTAAACTAGAAAAT
CAGTACGTTAACTCTAAGCC

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MLILSIYIAISIGVSFICSVLEAILLSISPSYLAKLRQENHPAAPRLTALKDNVDRPLSSILTLNTIAHTAGAAASGAQA
SIVFGSEWLGVFSAFLTFAILLFSEIVPKTIGATYWRQLAPMAATMLHWMVLLLSPVVWMSEQITKRLSRGHQAPKLRDE
ITAMATLAKENGEFAEGESKILNNILNIQDVPVTQVMTPRTVLFRVNAEMTVEQFLENHSDTPFSRPLVYSEDSDNIIGF
THRLELFSAMRKGQGERPLGAMMRPIQVVISTSTLPKAFEQLMKHRAQLALVIDEYGTVQGLLTLEDIFEYMVGEEIIDE
ADKTTDMQQLAQQRWTNWKNKHGVIDNTDTEEEEKE

Sequences:

>Translated_356_residues
MLILSIYIAISIGVSFICSVLEAILLSISPSYLAKLRQENHPAAPRLTALKDNVDRPLSSILTLNTIAHTAGAAASGAQA
SIVFGSEWLGVFSAFLTFAILLFSEIVPKTIGATYWRQLAPMAATMLHWMVLLLSPVVWMSEQITKRLSRGHQAPKLRDE
ITAMATLAKENGEFAEGESKILNNILNIQDVPVTQVMTPRTVLFRVNAEMTVEQFLENHSDTPFSRPLVYSEDSDNIIGF
THRLELFSAMRKGQGERPLGAMMRPIQVVISTSTLPKAFEQLMKHRAQLALVIDEYGTVQGLLTLEDIFEYMVGEEIIDE
ADKTTDMQQLAQQRWTNWKNKHGVIDNTDTEEEEKE
>Mature_356_residues
MLILSIYIAISIGVSFICSVLEAILLSISPSYLAKLRQENHPAAPRLTALKDNVDRPLSSILTLNTIAHTAGAAASGAQA
SIVFGSEWLGVFSAFLTFAILLFSEIVPKTIGATYWRQLAPMAATMLHWMVLLLSPVVWMSEQITKRLSRGHQAPKLRDE
ITAMATLAKENGEFAEGESKILNNILNIQDVPVTQVMTPRTVLFRVNAEMTVEQFLENHSDTPFSRPLVYSEDSDNIIGF
THRLELFSAMRKGQGERPLGAMMRPIQVVISTSTLPKAFEQLMKHRAQLALVIDEYGTVQGLLTLEDIFEYMVGEEIIDE
ADKTTDMQQLAQQRWTNWKNKHGVIDNTDTEEEEKE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=250, Percent_Identity=24.8, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI145693175, Length=339, Percent_Identity=24.188790560472, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786879, Length=186, Percent_Identity=30.1075268817204, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1790664, Length=332, Percent_Identity=24.0963855421687, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082033, Length=209, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6324512, Length=258, Percent_Identity=24.4186046511628, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 39776; Mature: 39776

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSIYIAISIGVSFICSVLEAILLSISPSYLAKLRQENHPAAPRLTALKDNVDRPLSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
ILTLNTIAHTAGAAASGAQASIVFGSEWLGVFSAFLTFAILLFSEIVPKTIGATYWRQLA
HHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PMAATMLHWMVLLLSPVVWMSEQITKRLSRGHQAPKLRDEITAMATLAKENGEFAEGESK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
ILNNILNIQDVPVTQVMTPRTVLFRVNAEMTVEQFLENHSDTPFSRPLVYSEDSDNIIGF
HHHHHHCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCEEECCCCCCEEHH
THRLELFSAMRKGQGERPLGAMMRPIQVVISTSTLPKAFEQLMKHRAQLALVIDEYGTVQ
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEHHHCCCHH
GLLTLEDIFEYMVGEEIIDEADKTTDMQQLAQQRWTNWKNKHGVIDNTDTEEEEKE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MLILSIYIAISIGVSFICSVLEAILLSISPSYLAKLRQENHPAAPRLTALKDNVDRPLSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
ILTLNTIAHTAGAAASGAQASIVFGSEWLGVFSAFLTFAILLFSEIVPKTIGATYWRQLA
HHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PMAATMLHWMVLLLSPVVWMSEQITKRLSRGHQAPKLRDEITAMATLAKENGEFAEGESK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
ILNNILNIQDVPVTQVMTPRTVLFRVNAEMTVEQFLENHSDTPFSRPLVYSEDSDNIIGF
HHHHHHCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCEEECCCCCCEEHH
THRLELFSAMRKGQGERPLGAMMRPIQVVISTSTLPKAFEQLMKHRAQLALVIDEYGTVQ
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEHHHCCCHH
GLLTLEDIFEYMVGEEIIDEADKTTDMQQLAQQRWTNWKNKHGVIDNTDTEEEEKE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]