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The map label for this gene is ylbK [H]

Identifier: 59712766

GI number: 59712766

Start: 2418351

End: 2420621

Strand: Reverse

Name: ylbK [H]

Synonym: VF_2159

Alternate gene names: 59712766

Gene position: 2420621-2418351 (Counterclockwise)

Preceding gene: 59712769

Following gene: 172087756

Centisome position: 83.54

GC content: 36.28

Gene sequence:

>2271_bases
ATGCGCTTCAAGCCATTCATTTTTTCTTCTGTGTTTCTCTATTTATTTTCTTCTACTGCTGTTGCTAGTGATGAATCTCG
TCCAAAAATAGGTCTTGTTCTTGCTGGTGGAGGAGCAAAAGGCGCTGCTCATATTGGTGTTTTAAAAGCATTAGAAGAGA
TGCACATACCTGTTGATTATATAACCGGTACCAGTATGGGAGCCTATGTTGGTGGATTATATGCATCAGGAATGAGCGCT
GATGAAATAGAAGCATTTATTGATACAGTTGACTGGAACAGTGGCTTTGTTGATAAGGTTGAGCGTAGTGAAAGACAGAT
CAGAGATAAAGAATATGAAGACCGTTATCAAATAGGTACGGATATTGGTTTTTCATTTACAGAATTAAAAGCCCCAAAAG
GTTTTGTACAAGGCCAGACAATGGCCAAAATACTCAGAACTACATCAGATAATATTCCTTACTTAAATTCCTTCGATCAG
TTACCGATCCCTTTTCGTGCTGTTGCAACAGATATTGAAAAACTTGAACCGGTTGTTTTAGATAAAGGCAACTTAGCAGA
AGCTATGATGGCAAGCATGTCAGTTCCTGGCGCACTTCCACCTGCAGAATATGACGGCCGACTTCTTGTTGATGGTGGTG
TTGTAAATAATATGCCTGTTGATGTTGTTAGAGAAATGGGAGCAGATATCGTTATAGCTGTAGATATTGGTTCTGATTAT
TTAGAAGCTGATGACATTTCTAGTTACCTTTCTGTCATGGGACAATTGACGAACTTTATGGTGAAAAATAGCACCAAACA
ACAAGAAAAGCTTCTTGGTGATAAAGATATTTTACTAGCGCCACATGTAGGAAAAATGGAAACGGCCGAGTTCGACAAAA
TGCCCTTTGCTTATGGTAAAGGTTATGACATCGCTTACGAAAAACATAAAGCACTAGATAAATTAGTATTATCTGATGAA
AAGTACCAAGAATATTTAAAGGAAAAAGAGATAAAAGCGTCCACTTTGCTTAGAGGTGAAGACCTGTATGTAAATAAGAT
AACCATTAAAAATGATAGTTTGTATACAGAGAGTATGCTTTTAGATCGTTTAAATTTAGAAGAAGGGAGATCTTATAGTG
CCGACGAACTCGAAGAACATATTCGAGATCTCTATGTGATCGATCGCTTTGAAAGAGTAGATTATTACTATCAAGAAAAT
GAAGAAGGCACACATGATCTAATCGTTGAAGTTAAAGAAAAAAGTTGGGGACCGAATTATTTGGATTTCCGTTTTGCTTT
AGAAGATGATTTTGATAATCAAAGTAAATATTCTCTTGGGATGTCGATTAACTTTACAGATATTGAATTAACTGGATTAA
GAGATAATCGTTCTGAGTTACGAACCAACTTTGAATTAGGTACTGATAAATTGGTTTCAGCTGAGTTGTATACTCCATTT
TTAGTTAATCAATTATTATTCACTTCTTTTAAATCTGTTTATAGTGTTGAGCAAAAGAAATTCTCTTTATCCGGTAATGA
ATTAGGATCAATTGATAATGATTTCCCTCTGGAATACAGTGACTTAGTATTTGAAGGTGCTGTTGGACTACAAGGTCATT
TGTGGAGCGATTTTCGTATTGGTGGTCGTTATACAAAAGGTAAAGTGGCATTTACTAGTCTAAGAGATCTGAATGCAAGC
TACAGCCGTGAGGGGATCTTTGCGCAATATAGACTAGATACCTTAGATAATTTCACCTTCCCAACTAAGGGTTTTTATGT
AAAGGCTGAATATCTTTATTCGCATGATAATGTTGAAGATAGTGTTGTTGATATTGAGGCAACCAAAGATTCCGTCATAG
AAATATCATTGAATACAAGGGCTGCATGGACATATTCTCGTCATACTTTCGTCGGTAATTTTGAATATGGTGTTGTTGAG
AATAAAAAGGGAGATTTACAGTTAGAGCCTAAATCTCTTGGTGGTTTCTTACGTTTATCTGGTACACCTAAAGATAGTTT
AACTGGTCAAAACTTGATTTTCGGTAGTTTGGTTTATCGTTATCGCTTGATGGATAACGATTTTGGTTTGTTCCAATCGC
CTATTTATTTAGGGGCTTCATTAGAAAATGGTGGTCTTTGGAATCAGGATAGTATTAAGGACGCGCCACTCTATACTGCA
GGTTCTGCTTTTATTGGTGTTGATAGTCCAATTGGTCCTATTGTCTTGGCTTATGGTCGAACAGAGCAGAATCATGAATC
AGTATATTTAAGTATTGGCGCTGTTTTATAG

Upstream 100 bases:

>100_bases
TGAAAATAGAGTTTGCTCATTGTCAGTTCTTGCTAGTTAGGCTTTTTATCTCCCTCATCATCCTGTATTCTTTTTATATC
AATATTTCAAGGATGATATT

Downstream 100 bases:

>100_bases
TTCAAAAATGCGCCATAAGTCGTATGTTGTTTGTTGTGGGTAGATTTTAATTTTAAGTTAAATTTGATATCATCTCGCCA
CAAATTTAGTCTATATCGAT

Product: serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 756; Mature: 756

Protein sequence:

>756_residues
MRFKPFIFSSVFLYLFSSTAVASDESRPKIGLVLAGGGAKGAAHIGVLKALEEMHIPVDYITGTSMGAYVGGLYASGMSA
DEIEAFIDTVDWNSGFVDKVERSERQIRDKEYEDRYQIGTDIGFSFTELKAPKGFVQGQTMAKILRTTSDNIPYLNSFDQ
LPIPFRAVATDIEKLEPVVLDKGNLAEAMMASMSVPGALPPAEYDGRLLVDGGVVNNMPVDVVREMGADIVIAVDIGSDY
LEADDISSYLSVMGQLTNFMVKNSTKQQEKLLGDKDILLAPHVGKMETAEFDKMPFAYGKGYDIAYEKHKALDKLVLSDE
KYQEYLKEKEIKASTLLRGEDLYVNKITIKNDSLYTESMLLDRLNLEEGRSYSADELEEHIRDLYVIDRFERVDYYYQEN
EEGTHDLIVEVKEKSWGPNYLDFRFALEDDFDNQSKYSLGMSINFTDIELTGLRDNRSELRTNFELGTDKLVSAELYTPF
LVNQLLFTSFKSVYSVEQKKFSLSGNELGSIDNDFPLEYSDLVFEGAVGLQGHLWSDFRIGGRYTKGKVAFTSLRDLNAS
YSREGIFAQYRLDTLDNFTFPTKGFYVKAEYLYSHDNVEDSVVDIEATKDSVIEISLNTRAAWTYSRHTFVGNFEYGVVE
NKKGDLQLEPKSLGGFLRLSGTPKDSLTGQNLIFGSLVYRYRLMDNDFGLFQSPIYLGASLENGGLWNQDSIKDAPLYTA
GSAFIGVDSPIGPIVLAYGRTEQNHESVYLSIGAVL

Sequences:

>Translated_756_residues
MRFKPFIFSSVFLYLFSSTAVASDESRPKIGLVLAGGGAKGAAHIGVLKALEEMHIPVDYITGTSMGAYVGGLYASGMSA
DEIEAFIDTVDWNSGFVDKVERSERQIRDKEYEDRYQIGTDIGFSFTELKAPKGFVQGQTMAKILRTTSDNIPYLNSFDQ
LPIPFRAVATDIEKLEPVVLDKGNLAEAMMASMSVPGALPPAEYDGRLLVDGGVVNNMPVDVVREMGADIVIAVDIGSDY
LEADDISSYLSVMGQLTNFMVKNSTKQQEKLLGDKDILLAPHVGKMETAEFDKMPFAYGKGYDIAYEKHKALDKLVLSDE
KYQEYLKEKEIKASTLLRGEDLYVNKITIKNDSLYTESMLLDRLNLEEGRSYSADELEEHIRDLYVIDRFERVDYYYQEN
EEGTHDLIVEVKEKSWGPNYLDFRFALEDDFDNQSKYSLGMSINFTDIELTGLRDNRSELRTNFELGTDKLVSAELYTPF
LVNQLLFTSFKSVYSVEQKKFSLSGNELGSIDNDFPLEYSDLVFEGAVGLQGHLWSDFRIGGRYTKGKVAFTSLRDLNAS
YSREGIFAQYRLDTLDNFTFPTKGFYVKAEYLYSHDNVEDSVVDIEATKDSVIEISLNTRAAWTYSRHTFVGNFEYGVVE
NKKGDLQLEPKSLGGFLRLSGTPKDSLTGQNLIFGSLVYRYRLMDNDFGLFQSPIYLGASLENGGLWNQDSIKDAPLYTA
GSAFIGVDSPIGPIVLAYGRTEQNHESVYLSIGAVL
>Mature_756_residues
MRFKPFIFSSVFLYLFSSTAVASDESRPKIGLVLAGGGAKGAAHIGVLKALEEMHIPVDYITGTSMGAYVGGLYASGMSA
DEIEAFIDTVDWNSGFVDKVERSERQIRDKEYEDRYQIGTDIGFSFTELKAPKGFVQGQTMAKILRTTSDNIPYLNSFDQ
LPIPFRAVATDIEKLEPVVLDKGNLAEAMMASMSVPGALPPAEYDGRLLVDGGVVNNMPVDVVREMGADIVIAVDIGSDY
LEADDISSYLSVMGQLTNFMVKNSTKQQEKLLGDKDILLAPHVGKMETAEFDKMPFAYGKGYDIAYEKHKALDKLVLSDE
KYQEYLKEKEIKASTLLRGEDLYVNKITIKNDSLYTESMLLDRLNLEEGRSYSADELEEHIRDLYVIDRFERVDYYYQEN
EEGTHDLIVEVKEKSWGPNYLDFRFALEDDFDNQSKYSLGMSINFTDIELTGLRDNRSELRTNFELGTDKLVSAELYTPF
LVNQLLFTSFKSVYSVEQKKFSLSGNELGSIDNDFPLEYSDLVFEGAVGLQGHLWSDFRIGGRYTKGKVAFTSLRDLNAS
YSREGIFAQYRLDTLDNFTFPTKGFYVKAEYLYSHDNVEDSVVDIEATKDSVIEISLNTRAAWTYSRHTFVGNFEYGVVE
NKKGDLQLEPKSLGGFLRLSGTPKDSLTGQNLIFGSLVYRYRLMDNDFGLFQSPIYLGASLENGGLWNQDSIKDAPLYTA
GSAFIGVDSPIGPIVLAYGRTEQNHESVYLSIGAVL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI148727335, Length=222, Percent_Identity=36.036036036036, Blast_Score=121, Evalue=3e-27,
Organism=Homo sapiens, GI148727290, Length=222, Percent_Identity=36.036036036036, Blast_Score=121, Evalue=3e-27,
Organism=Homo sapiens, GI260656039, Length=222, Percent_Identity=36.036036036036, Blast_Score=119, Evalue=1e-26,
Organism=Homo sapiens, GI260656041, Length=222, Percent_Identity=36.036036036036, Blast_Score=119, Evalue=1e-26,
Organism=Homo sapiens, GI116256487, Length=222, Percent_Identity=36.036036036036, Blast_Score=119, Evalue=1e-26,
Organism=Homo sapiens, GI260656043, Length=222, Percent_Identity=36.036036036036, Blast_Score=119, Evalue=1e-26,
Organism=Homo sapiens, GI260656037, Length=222, Percent_Identity=36.036036036036, Blast_Score=119, Evalue=1e-26,
Organism=Escherichia coli, GI226510936, Length=222, Percent_Identity=31.981981981982, Blast_Score=102, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71997289, Length=223, Percent_Identity=32.7354260089686, Blast_Score=90, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71997299, Length=195, Percent_Identity=34.3589743589744, Blast_Score=90, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6323581, Length=216, Percent_Identity=34.2592592592593, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28571388, Length=222, Percent_Identity=35.5855855855856, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281376913, Length=222, Percent_Identity=35.5855855855856, Blast_Score=94, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 84725; Mature: 84725

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKPFIFSSVFLYLFSSTAVASDESRPKIGLVLAGGGAKGAAHIGVLKALEEMHIPVDY
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
ITGTSMGAYVGGLYASGMSADEIEAFIDTVDWNSGFVDKVERSERQIRDKEYEDRYQIGT
ECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC
DIGFSFTELKAPKGFVQGQTMAKILRTTSDNIPYLNSFDQLPIPFRAVATDIEKLEPVVL
CCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
DKGNLAEAMMASMSVPGALPPAEYDGRLLVDGGVVNNMPVDVVREMGADIVIAVDIGSDY
CCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCC
LEADDISSYLSVMGQLTNFMVKNSTKQQEKLLGDKDILLAPHVGKMETAEFDKMPFAYGK
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHCCCCCCCCC
GYDIAYEKHKALDKLVLSDEKYQEYLKEKEIKASTLLRGEDLYVNKITIKNDSLYTESML
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEECCCCEEEEEEEEECCCCCHHHHH
LDRLNLEEGRSYSADELEEHIRDLYVIDRFERVDYYYQENEEGTHDLIVEVKEKSWGPNY
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCE
LDFRFALEDDFDNQSKYSLGMSINFTDIELTGLRDNRSELRTNFELGTDKLVSAELYTPF
EEEEEEECCCCCCCCEEEEEEEEEEEEEEEEECCCCHHHHHCCCCCCCCCEEEHHHHHHH
LVNQLLFTSFKSVYSVEQKKFSLSGNELGSIDNDFPLEYSDLVFEGAVGLQGHLWSDFRI
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHEEEECCCCCCCCEECCEEE
GGRYTKGKVAFTSLRDLNASYSREGIFAQYRLDTLDNFTFPTKGFYVKAEYLYSHDNVED
CCEEECCEEEEEEHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCC
SVVDIEATKDSVIEISLNTRAAWTYSRHTFVGNFEYGVVENKKGDLQLEPKSLGGFLRLS
CEEEEEECCCCEEEEEECCEEEEEEECEEEEECEEEEEEECCCCCEEECHHHCCCEEEEC
GTPKDSLTGQNLIFGSLVYRYRLMDNDFGLFQSPIYLGASLENGGLWNQDSIKDAPLYTA
CCCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEC
GSAFIGVDSPIGPIVLAYGRTEQNHESVYLSIGAVL
CCEEEECCCCCCCEEEEECCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRFKPFIFSSVFLYLFSSTAVASDESRPKIGLVLAGGGAKGAAHIGVLKALEEMHIPVDY
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
ITGTSMGAYVGGLYASGMSADEIEAFIDTVDWNSGFVDKVERSERQIRDKEYEDRYQIGT
ECCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCC
DIGFSFTELKAPKGFVQGQTMAKILRTTSDNIPYLNSFDQLPIPFRAVATDIEKLEPVVL
CCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
DKGNLAEAMMASMSVPGALPPAEYDGRLLVDGGVVNNMPVDVVREMGADIVIAVDIGSDY
CCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCC
LEADDISSYLSVMGQLTNFMVKNSTKQQEKLLGDKDILLAPHVGKMETAEFDKMPFAYGK
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHCCCCCCCCC
GYDIAYEKHKALDKLVLSDEKYQEYLKEKEIKASTLLRGEDLYVNKITIKNDSLYTESML
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEECCCCEEEEEEEEECCCCCHHHHH
LDRLNLEEGRSYSADELEEHIRDLYVIDRFERVDYYYQENEEGTHDLIVEVKEKSWGPNY
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCE
LDFRFALEDDFDNQSKYSLGMSINFTDIELTGLRDNRSELRTNFELGTDKLVSAELYTPF
EEEEEEECCCCCCCCEEEEEEEEEEEEEEEEECCCCHHHHHCCCCCCCCCEEEHHHHHHH
LVNQLLFTSFKSVYSVEQKKFSLSGNELGSIDNDFPLEYSDLVFEGAVGLQGHLWSDFRI
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHEEEECCCCCCCCEECCEEE
GGRYTKGKVAFTSLRDLNASYSREGIFAQYRLDTLDNFTFPTKGFYVKAEYLYSHDNVED
CCEEECCEEEEEEHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCC
SVVDIEATKDSVIEISLNTRAAWTYSRHTFVGNFEYGVVENKKGDLQLEPKSLGGFLRLS
CEEEEEECCCCEEEEEECCEEEEEEECEEEEECEEEEEEECCCCCEEECHHHCCCEEEEC
GTPKDSLTGQNLIFGSLVYRYRLMDNDFGLFQSPIYLGASLENGGLWNQDSIKDAPLYTA
CCCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEC
GSAFIGVDSPIGPIVLAYGRTEQNHESVYLSIGAVL
CCEEEECCCCCCCEEEEECCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]