| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is mrcB [H]
Identifier: 59712769
GI number: 59712769
Start: 2429366
End: 2431738
Strand: Reverse
Name: mrcB [H]
Synonym: VF_2162
Alternate gene names: 59712769
Gene position: 2431738-2429366 (Counterclockwise)
Preceding gene: 59712770
Following gene: 59712766
Centisome position: 83.92
GC content: 40.16
Gene sequence:
>2373_bases ATGGCTGAAAAGAAAAAAACACCAACAAAAGCTGCCCCTAAAAAAACGGCAGCAAAGAAGAAAGCACCAGCGAAAAGAAA AACATCATCTAAGAAAAAAGCGCAATCGTCTCGTCCTTTTTGGAAGAGTTTGATGATTTTAGGCTTTAAATTAAGTTTGG TTGTTTTAGCTATTCTTGTTATCGCCGGTATTTATCTTGATACCGTAGTTAAGAAACGTTTTGATGGTCAATTATTTAGC TTACCAACGGTTGTTTATAGCCGAGTGTTAACGTTATCTCCTGGGCAAAATATCAGTTTAAAAACGGTTCAAAATGAGTT GGATTTACTTAAATATCAAAAAGTACGTCAACCTCAACGCCCTGGTGAATATTCATCATCATCAACAAAAATTGAATTAA TTCGTCGTCCTTTTGAATTTCAACAAGGACCAGAGCCGGATCGTCACGTCATGCTTTATTTTAATTCTGAAGGACTTCAG AAAATTGAAAATAGAAGCGTAATGAAACAAATGGGTTTTTTACAAATCGAGCCTCAGTTCTTAGGTATGTTGGATGCTGA TGATGATCAACAGCGTTTATTCTTACGTAGAGAGCAGTTTCCTGAGGTAATGGTTGATGCCTTACTAGCGACCGAAGACC GTGATTTTTATCAGCACGATGGTGTTTCTCCTCTTGCTATAGCTCGAGCTATGGTAGTGAATGCTAAGGCAGGACGAACC GTGCAAGGTGGTAGTACGCTGACTCAACAATTGGCGAAAAACTTATTTCTTTCTCGTGAACGTACACTATGGCGAAAAGT TCGAGAAGCGTATCTCGCATTAATTTTAGACTATCGTTATAGCAAAGACCGTATTTTAGAAGCGTATTTAAATGAGGTGT ATTTAGGACAAACTGGTGGAGAGGCCATTCATGGTTTTGGCTTGGCTGCACAGGTATATTTTGGTCGACCAATAGAAGAG TTGCGTATTGATCAACTAGCGATGTTAGTTGGTATGGTGAAAGGCCCGTCTTATTACAATCCGATGCGTTTCCCTGAACG AGTAAAAGAGCGCCGAGATTTAGTTCTTCGATTAATGATGCAAGAAGAGATCTTATCGCCTCATCAATATGAAATGGCAG CTAGCCGTCCACTCGATGTAAAAAAACGAGCAACTATAGCGACAAGACAACCGGCTTATTTCCAGCAATTAAAATGGGAG TTAAAAGAGAAAGCGGGTAAGGCATATCAGAAAGGAGAAGGGCTACGAGTATTCACTACTCTGGATCCTCTGTCTCAGCA AAAAGCAGAGCAGGCCGTTGAGAGAACAGTACCTCAGTTAGAAAAAAGAGCTGGGAAGGGCTTGGAAGCTGCAATGGTGA TTGTTGATCGTCAAAGTGGTGAAATTCGAGCAATGATTGGTGGCAGCCGAACTGGATTTGATGGATTTAACCGAGCGATT AATGCTAAACGACCAATTGGGTCATTAGTTAAACCTGCTATCTATTTGAGTGCATTAGAAACACCGGATAAGTTTTCATT AGCAACAACGTTAGATGATAAACCGATTGCATTAAAAGGAAGTAAAGGTACAACATGGACGCCAAGAAACTTTGACCGTA AATTCAGAGGAGAGGTTCCTCTTTATTATGCTCTTTCTCGTTCTTTAAATGTACCAACAGTAAATCTTGGTTTGATGGTT GGCTTAAGCAAAGTGACCGACACTCTAGTTAAATTAGGGGTTGATGCAAATGAGATTAATCAAGTGCCATCAATGCTATT AGGATCCATCAACTTATCTCCATATCAAGTAGCTCAAATGTATCAAACGATTGGTAATGGTGGGAGAAAAGCCGCTTTAA CAGCACTTAAGGCAGTTGTAGATAATGATGGAAACTTACTTTATGAAAACTTCCCTAAATCAGCTGCAGTCGTTCCTGAG CAAGCTACGTGGTTAACTGTGTATGGAATGAAACGAACGGTGAGTGAAGGAACAGCTCGATTCTTAAATAGTAAATATAG TTGGGCAGCTTTAGCGGGTAAAACGGGAACAAGTAACGATTCCAGAGACAGTTGGTATGCTGGTATTGATGGTCGTGAAG TTGCCATTACTTGGCTAGGTCGCGATGATAACAAACCAATGAAGTTGACGGGGTCAAGTGGTGCGTTACGAGTTTACGCT GATTATCTAAGTATGCGTTCTCCTGAAGTGCTTCAATTACCGTGGCCAAATGAAGTGACAGCCGCTGGATTTGATTTACA AAGTAATAAAACACTAGAACCAGATTGTTCAGGTCGAGTGAAGTTGCCTATTTGGGATAAAAAAGGGCAGTATAAAGCTG AGTGTGAAAAGAATAAGCCAGCAGCTTGGTTAACTGATATTTTTGGTTTTTAG
Upstream 100 bases:
>100_bases TTATCCAAAGCATATTTGGCCAGATGATCCTGCAACACATCAAGCAACCAAAAAAACAAAACGTCACTTTAACTAATATT CATAATTAAAAAGATTTCTC
Downstream 100 bases:
>100_bases CGGCTAACAAAGAAATCCTCTCTTAATTATCAATTCATCTTAGATAGTTAAGAGAGGAGACGACATCAATTTATTTTTTA ATGAGAGTTGAAAAGATTTT
Product: fused glycosyl transferase and transpeptidase
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MAEKKKTPTKAAPKKTAAKKKAPAKRKTSSKKKAQSSRPFWKSLMILGFKLSLVVLAILVIAGIYLDTVVKKRFDGQLFS LPTVVYSRVLTLSPGQNISLKTVQNELDLLKYQKVRQPQRPGEYSSSSTKIELIRRPFEFQQGPEPDRHVMLYFNSEGLQ KIENRSVMKQMGFLQIEPQFLGMLDADDDQQRLFLRREQFPEVMVDALLATEDRDFYQHDGVSPLAIARAMVVNAKAGRT VQGGSTLTQQLAKNLFLSRERTLWRKVREAYLALILDYRYSKDRILEAYLNEVYLGQTGGEAIHGFGLAAQVYFGRPIEE LRIDQLAMLVGMVKGPSYYNPMRFPERVKERRDLVLRLMMQEEILSPHQYEMAASRPLDVKKRATIATRQPAYFQQLKWE LKEKAGKAYQKGEGLRVFTTLDPLSQQKAEQAVERTVPQLEKRAGKGLEAAMVIVDRQSGEIRAMIGGSRTGFDGFNRAI NAKRPIGSLVKPAIYLSALETPDKFSLATTLDDKPIALKGSKGTTWTPRNFDRKFRGEVPLYYALSRSLNVPTVNLGLMV GLSKVTDTLVKLGVDANEINQVPSMLLGSINLSPYQVAQMYQTIGNGGRKAALTALKAVVDNDGNLLYENFPKSAAVVPE QATWLTVYGMKRTVSEGTARFLNSKYSWAALAGKTGTSNDSRDSWYAGIDGREVAITWLGRDDNKPMKLTGSSGALRVYA DYLSMRSPEVLQLPWPNEVTAAGFDLQSNKTLEPDCSGRVKLPIWDKKGQYKAECEKNKPAAWLTDIFGF
Sequences:
>Translated_790_residues MAEKKKTPTKAAPKKTAAKKKAPAKRKTSSKKKAQSSRPFWKSLMILGFKLSLVVLAILVIAGIYLDTVVKKRFDGQLFS LPTVVYSRVLTLSPGQNISLKTVQNELDLLKYQKVRQPQRPGEYSSSSTKIELIRRPFEFQQGPEPDRHVMLYFNSEGLQ KIENRSVMKQMGFLQIEPQFLGMLDADDDQQRLFLRREQFPEVMVDALLATEDRDFYQHDGVSPLAIARAMVVNAKAGRT VQGGSTLTQQLAKNLFLSRERTLWRKVREAYLALILDYRYSKDRILEAYLNEVYLGQTGGEAIHGFGLAAQVYFGRPIEE LRIDQLAMLVGMVKGPSYYNPMRFPERVKERRDLVLRLMMQEEILSPHQYEMAASRPLDVKKRATIATRQPAYFQQLKWE LKEKAGKAYQKGEGLRVFTTLDPLSQQKAEQAVERTVPQLEKRAGKGLEAAMVIVDRQSGEIRAMIGGSRTGFDGFNRAI NAKRPIGSLVKPAIYLSALETPDKFSLATTLDDKPIALKGSKGTTWTPRNFDRKFRGEVPLYYALSRSLNVPTVNLGLMV GLSKVTDTLVKLGVDANEINQVPSMLLGSINLSPYQVAQMYQTIGNGGRKAALTALKAVVDNDGNLLYENFPKSAAVVPE QATWLTVYGMKRTVSEGTARFLNSKYSWAALAGKTGTSNDSRDSWYAGIDGREVAITWLGRDDNKPMKLTGSSGALRVYA DYLSMRSPEVLQLPWPNEVTAAGFDLQSNKTLEPDCSGRVKLPIWDKKGQYKAECEKNKPAAWLTDIFGF >Mature_789_residues AEKKKTPTKAAPKKTAAKKKAPAKRKTSSKKKAQSSRPFWKSLMILGFKLSLVVLAILVIAGIYLDTVVKKRFDGQLFSL PTVVYSRVLTLSPGQNISLKTVQNELDLLKYQKVRQPQRPGEYSSSSTKIELIRRPFEFQQGPEPDRHVMLYFNSEGLQK IENRSVMKQMGFLQIEPQFLGMLDADDDQQRLFLRREQFPEVMVDALLATEDRDFYQHDGVSPLAIARAMVVNAKAGRTV QGGSTLTQQLAKNLFLSRERTLWRKVREAYLALILDYRYSKDRILEAYLNEVYLGQTGGEAIHGFGLAAQVYFGRPIEEL RIDQLAMLVGMVKGPSYYNPMRFPERVKERRDLVLRLMMQEEILSPHQYEMAASRPLDVKKRATIATRQPAYFQQLKWEL KEKAGKAYQKGEGLRVFTTLDPLSQQKAEQAVERTVPQLEKRAGKGLEAAMVIVDRQSGEIRAMIGGSRTGFDGFNRAIN AKRPIGSLVKPAIYLSALETPDKFSLATTLDDKPIALKGSKGTTWTPRNFDRKFRGEVPLYYALSRSLNVPTVNLGLMVG LSKVTDTLVKLGVDANEINQVPSMLLGSINLSPYQVAQMYQTIGNGGRKAALTALKAVVDNDGNLLYENFPKSAAVVPEQ ATWLTVYGMKRTVSEGTARFLNSKYSWAALAGKTGTSNDSRDSWYAGIDGREVAITWLGRDDNKPMKLTGSSGALRVYAD YLSMRSPEVLQLPWPNEVTAAGFDLQSNKTLEPDCSGRVKLPIWDKKGQYKAECEKNKPAAWLTDIFGF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=737, Percent_Identity=47.7611940298507, Blast_Score=689, Evalue=0.0, Organism=Escherichia coli, GI87082258, Length=259, Percent_Identity=38.6100386100386, Blast_Score=185, Evalue=1e-47, Organism=Escherichia coli, GI1788867, Length=573, Percent_Identity=28.0977312390925, Blast_Score=173, Evalue=4e-44, Organism=Escherichia coli, GI1789601, Length=182, Percent_Identity=34.0659340659341, Blast_Score=86, Evalue=8e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 88577; Mature: 88446
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKKKTPTKAAPKKTAAKKKAPAKRKTSSKKKAQSSRPFWKSLMILGFKLSLVVLAILV CCCCCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IAGIYLDTVVKKRFDGQLFSLPTVVYSRVLTLSPGQNISLKTVQNELDLLKYQKVRQPQR HHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCC PGEYSSSSTKIELIRRPFEFQQGPEPDRHVMLYFNSEGLQKIENRSVMKQMGFLQIEPQF CCCCCCCCCHHHHHHCCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEECHHH LGMLDADDDQQRLFLRREQFPEVMVDALLATEDRDFYQHDGVSPLAIARAMVVNAKAGRT HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHEECCCCCE VQGGSTLTQQLAKNLFLSRERTLWRKVREAYLALILDYRYSKDRILEAYLNEVYLGQTGG ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCC EAIHGFGLAAQVYFGRPIEELRIDQLAMLVGMVKGPSYYNPMRFPERVKERRDLVLRLMM CHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH QEEILSPHQYEMAASRPLDVKKRATIATRQPAYFQQLKWELKEKAGKAYQKGEGLRVFTT HHHHCCCCHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCEEEEEE LDPLSQQKAEQAVERTVPQLEKRAGKGLEAAMVIVDRQSGEIRAMIGGSRTGFDGFNRAI CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHC NAKRPIGSLVKPAIYLSALETPDKFSLATTLDDKPIALKGSKGTTWTPRNFDRKFRGEVP CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCHHHCCCCC LYYALSRSLNVPTVNLGLMVGLSKVTDTLVKLGVDANEINQVPSMLLGSINLSPYQVAQM EEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH YQTIGNGGRKAALTALKAVVDNDGNLLYENFPKSAAVVPEQATWLTVYGMKRTVSEGTAR HHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHH FLNSKYSWAALAGKTGTSNDSRDSWYAGIDGREVAITWLGRDDNKPMKLTGSSGALRVYA HHCCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCEEEECCCCCEEHHH DYLSMRSPEVLQLPWPNEVTAAGFDLQSNKTLEPDCSGRVKLPIWDKKGQYKAECEKNKP HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCC AAWLTDIFGF HHHHHHHHCC >Mature Secondary Structure AEKKKTPTKAAPKKTAAKKKAPAKRKTSSKKKAQSSRPFWKSLMILGFKLSLVVLAILV CCCCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IAGIYLDTVVKKRFDGQLFSLPTVVYSRVLTLSPGQNISLKTVQNELDLLKYQKVRQPQR HHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCC PGEYSSSSTKIELIRRPFEFQQGPEPDRHVMLYFNSEGLQKIENRSVMKQMGFLQIEPQF CCCCCCCCCHHHHHHCCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEECHHH LGMLDADDDQQRLFLRREQFPEVMVDALLATEDRDFYQHDGVSPLAIARAMVVNAKAGRT HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHEECCCCCE VQGGSTLTQQLAKNLFLSRERTLWRKVREAYLALILDYRYSKDRILEAYLNEVYLGQTGG ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCC EAIHGFGLAAQVYFGRPIEELRIDQLAMLVGMVKGPSYYNPMRFPERVKERRDLVLRLMM CHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH QEEILSPHQYEMAASRPLDVKKRATIATRQPAYFQQLKWELKEKAGKAYQKGEGLRVFTT HHHHCCCCHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCEEEEEE LDPLSQQKAEQAVERTVPQLEKRAGKGLEAAMVIVDRQSGEIRAMIGGSRTGFDGFNRAI CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHC NAKRPIGSLVKPAIYLSALETPDKFSLATTLDDKPIALKGSKGTTWTPRNFDRKFRGEVP CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCHHHCCCCC LYYALSRSLNVPTVNLGLMVGLSKVTDTLVKLGVDANEINQVPSMLLGSINLSPYQVAQM EEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH YQTIGNGGRKAALTALKAVVDNDGNLLYENFPKSAAVVPEQATWLTVYGMKRTVSEGTAR HHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHH FLNSKYSWAALAGKTGTSNDSRDSWYAGIDGREVAITWLGRDDNKPMKLTGSSGALRVYA HHCCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCEEEECCCCCEEHHH DYLSMRSPEVLQLPWPNEVTAAGFDLQSNKTLEPDCSGRVKLPIWDKKGQYKAECEKNKP HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCC AAWLTDIFGF HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]