Click here to switch to the map view.

The map label for this gene is 59712619

Identifier: 59712619

GI number: 59712619

Start: 2245380

End: 2246414

Strand: Reverse

Name: 59712619

Synonym: VF_2012

Alternate gene names: NA

Gene position: 2246414-2245380 (Counterclockwise)

Preceding gene: 59712620

Following gene: 59712618

Centisome position: 77.53

GC content: 41.55

Gene sequence:

>1035_bases
ATGCAAAAGAAAACAAAATTAGCAGTAGAGGGTTATAAAAAAGCCGTTGCTGCATCAAATAACGTATCAGATGTAACTGA
AAAATTTAATGTTACGCCTAATGGCGCTCAAAAAATCATTGCTCAAATTCGTGAGCGAAATTGGTTGCTGGGTAAAATTA
ATATTGTGCCAGTAAGCAACCAAAAAGGTGAAGCGATTGGCCTTGGCGTGACAGGAATGATTGCGAGCCGAACAAACACA
AAAGCAGGCAAAGAGCGCCAAACGAAAGCGGTATACAACATGAAGCCGATGCCGTATTTGTGTGAAAAGGTGGATTTTGA
TTCGCACATTCGTTACGAGCAGTTAGATGCGTTTGCGCACCTCCCTAATTTTAATCAGCTCATTAACTCGCAAACGCGAG
AGCAAATCGACATGAATAAAGTGACTATCGGTTGGTATGGCAAATCTTGTGCAGAAGATACAGATGCATCAGCAAACCCG
AATGGTGAAGATGTTTGTAAAGGTTGGTTCCAAGCCATTCGTGACAACAATCCTGATGCAATGTTGACTCAAGGTGAAAC
CGCAAACGAAATTCGCATTGGTGAAGGCGGTGATTTTATTAATCTTGATTTGGCCGTGATGAACGTGAAGGGATTACTTG
CTGATGAATGCGCAAATGCAAATGATTTAGTAGCCCTGATTGGTTCTGATCTTCTTGCATACGATAAAGCTAAATTTTAT
ACAGCACACGGCAACACGCCGAGTGAGAAGTCATTAATTGAAGACAAACAAGTGATCGGCACTTACGGCGGTTTACCTGC
GTTCTGTCCGCCATCGTTCCCGCCAACAGGGATTTTTGTCACAAGCTTTAAGAACCTTTCTCTTTACATTCAAAAAGATT
CAATTCGACGCTCTGTTGCAGTAAAGAATGATAAGCGTGATCAAATTGAAAACTTTGAATCAATGAACATGGCTTATGTT
GTTGAGCAGTTAGCAAAAGCCGCAGCGCTTGAGTTTGATAACGTGAAATTATGGATTGATGGCGCGTGGGTATAA

Upstream 100 bases:

>100_bases
ATCTAGCGGGTGTCGATGGCGATACTGAGTATTTATAAATAGTCGTTTAGTGATCTTTCTCCTTCTCTTTTTATTCTAAA
AAAATAGTGGATTTTAAATA

Downstream 100 bases:

>100_bases
CCACACTGATTCAATAAAAGTACACCCCCCATGCAGGCAAACACCGCTTTATCAAAAGAGTTTATGTTTTGCTATTAGCT
AAGTGTTTAGCCTGCACCTA

Product: major capsid protein

Products: NA

Alternate protein names: Capsid Protein; Phage Capsid Protein P2 Family; Phage Capsid Protein; Capsid Proteins; Phage Capsid Protein; Capsid; Phage Gene; Bacteriophage Capsid Protein; Gp2 Phage Capsid Protein P2 Family Protein; Phage-Related Capsid Protein; Prophage; Phage P2 Capsid GpN-Like Protein; Minor Capsid / Capsid Protein N*; Phage Capsid-Like Protein; Phage-Related Capsid Protein; Prophage Capsid Protein; Bacteriophage Protein; Phage-Related Capsid Completion Protein; Phage Protein; Bacteriophage Capsid Protein N; Capsid-Like Protein; Capsid Protein Phage Origin; Phage Capsid Protein N; Phage Capsid Family

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MQKKTKLAVEGYKKAVAASNNVSDVTEKFNVTPNGAQKIIAQIRERNWLLGKINIVPVSNQKGEAIGLGVTGMIASRTNT
KAGKERQTKAVYNMKPMPYLCEKVDFDSHIRYEQLDAFAHLPNFNQLINSQTREQIDMNKVTIGWYGKSCAEDTDASANP
NGEDVCKGWFQAIRDNNPDAMLTQGETANEIRIGEGGDFINLDLAVMNVKGLLADECANANDLVALIGSDLLAYDKAKFY
TAHGNTPSEKSLIEDKQVIGTYGGLPAFCPPSFPPTGIFVTSFKNLSLYIQKDSIRRSVAVKNDKRDQIENFESMNMAYV
VEQLAKAAALEFDNVKLWIDGAWV

Sequences:

>Translated_344_residues
MQKKTKLAVEGYKKAVAASNNVSDVTEKFNVTPNGAQKIIAQIRERNWLLGKINIVPVSNQKGEAIGLGVTGMIASRTNT
KAGKERQTKAVYNMKPMPYLCEKVDFDSHIRYEQLDAFAHLPNFNQLINSQTREQIDMNKVTIGWYGKSCAEDTDASANP
NGEDVCKGWFQAIRDNNPDAMLTQGETANEIRIGEGGDFINLDLAVMNVKGLLADECANANDLVALIGSDLLAYDKAKFY
TAHGNTPSEKSLIEDKQVIGTYGGLPAFCPPSFPPTGIFVTSFKNLSLYIQKDSIRRSVAVKNDKRDQIENFESMNMAYV
VEQLAKAAALEFDNVKLWIDGAWV
>Mature_344_residues
MQKKTKLAVEGYKKAVAASNNVSDVTEKFNVTPNGAQKIIAQIRERNWLLGKINIVPVSNQKGEAIGLGVTGMIASRTNT
KAGKERQTKAVYNMKPMPYLCEKVDFDSHIRYEQLDAFAHLPNFNQLINSQTREQIDMNKVTIGWYGKSCAEDTDASANP
NGEDVCKGWFQAIRDNNPDAMLTQGETANEIRIGEGGDFINLDLAVMNVKGLLADECANANDLVALIGSDLLAYDKAKFY
TAHGNTPSEKSLIEDKQVIGTYGGLPAFCPPSFPPTGIFVTSFKNLSLYIQKDSIRRSVAVKNDKRDQIENFESMNMAYV
VEQLAKAAALEFDNVKLWIDGAWV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37986; Mature: 37986

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKTKLAVEGYKKAVAASNNVSDVTEKFNVTPNGAQKIIAQIRERNWLLGKINIVPVSN
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEEECCC
QKGEAIGLGVTGMIASRTNTKAGKERQTKAVYNMKPMPYLCEKVDFDSHIRYEQLDAFAH
CCCCEEEECEEEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHC
LPNFNQLINSQTREQIDMNKVTIGWYGKSCAEDTDASANPNGEDVCKGWFQAIRDNNPDA
CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
MLTQGETANEIRIGEGGDFINLDLAVMNVKGLLADECANANDLVALIGSDLLAYDKAKFY
EEECCCCCCEEEECCCCCEEEEEEEEEEHHHHHHHHCCCCCCCHHHHCCHHHHCCCCEEE
TAHGNTPSEKSLIEDKQVIGTYGGLPAFCPPSFPPTGIFVTSFKNLSLYIQKDSIRRSVA
EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCHHHHHC
VKNDKRDQIENFESMNMAYVVEQLAKAAALEFDNVKLWIDGAWV
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHEEECCEEEEEECCCC
>Mature Secondary Structure
MQKKTKLAVEGYKKAVAASNNVSDVTEKFNVTPNGAQKIIAQIRERNWLLGKINIVPVSN
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEEECCC
QKGEAIGLGVTGMIASRTNTKAGKERQTKAVYNMKPMPYLCEKVDFDSHIRYEQLDAFAH
CCCCEEEECEEEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHC
LPNFNQLINSQTREQIDMNKVTIGWYGKSCAEDTDASANPNGEDVCKGWFQAIRDNNPDA
CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
MLTQGETANEIRIGEGGDFINLDLAVMNVKGLLADECANANDLVALIGSDLLAYDKAKFY
EEECCCCCCEEEECCCCCEEEEEEEEEEHHHHHHHHCCCCCCCHHHHCCHHHHCCCCEEE
TAHGNTPSEKSLIEDKQVIGTYGGLPAFCPPSFPPTGIFVTSFKNLSLYIQKDSIRRSVA
EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCHHHHHC
VKNDKRDQIENFESMNMAYVVEQLAKAAALEFDNVKLWIDGAWV
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA