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The map label for this gene is ybaK [H]

Identifier: 59712399

GI number: 59712399

Start: 2023567

End: 2024037

Strand: Reverse

Name: ybaK [H]

Synonym: VF_1792

Alternate gene names: 59712399

Gene position: 2024037-2023567 (Counterclockwise)

Preceding gene: 59712402

Following gene: 59712398

Centisome position: 69.85

GC content: 37.15

Gene sequence:

>471_bases
ATGACACCAGCAACAAAGTTATTAAAAAAAGCAAAAATTGAACATCAGGTGCTTGAGTATCATCATGATCCTAAAGCTCA
AGCATATGGTCTTGAGGCAGCGGAAAAGTTGGGATTAGATCAAAAAGAAGTATTTAAAACATTAGTTGTACAAGTGGATG
AAAAAGAGCTCGTTGTAGGTATTATTCCAGTTGCAGAGCAACTTAGTATGAAGCTAATTGCAAAAGCGGTTAAAGGTAAA
AAAGCAAAAATGGCTGATCCTGCTGTGGTTCAAAAGACAACTGGCTATGTGCTTGGAGGTGTCAGTCCTCTTGGTCAAAA
GAAGCGCTTAAAAACAGTCATTGATATTACAGCTGAATCTCTGGAAAGCATTTATGTTAGTGGTGGTAAAAGAGGTTTAG
ATATTGGTCTTGCGCCAAAAGATTTACAACAAGTGCTAAATGCGCAGTTTTTGGATATTAAAGCTGAGTAA

Upstream 100 bases:

>100_bases
ACTGGTTCAGGAGAATTGAGTGCTGTTCTGTCTTATTGCAGTTTGAGCGACCTGAACGAACGTATTTCAAAATATAGAAT
TATTTTTAAGGCGTAACACC

Downstream 100 bases:

>100_bases
TTCACATCATGGAAGGGAGAAAAACCATGAGAAAAAAAACAGTATCGCTTGTTCTTGGTAGCGGAGGGGCAAGAGGGCTT
GCTCATATTGGCGTTATCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTPATKLLKKAKIEHQVLEYHHDPKAQAYGLEAAEKLGLDQKEVFKTLVVQVDEKELVVGIIPVAEQLSMKLIAKAVKGK
KAKMADPAVVQKTTGYVLGGVSPLGQKKRLKTVIDITAESLESIYVSGGKRGLDIGLAPKDLQQVLNAQFLDIKAE

Sequences:

>Translated_156_residues
MTPATKLLKKAKIEHQVLEYHHDPKAQAYGLEAAEKLGLDQKEVFKTLVVQVDEKELVVGIIPVAEQLSMKLIAKAVKGK
KAKMADPAVVQKTTGYVLGGVSPLGQKKRLKTVIDITAESLESIYVSGGKRGLDIGLAPKDLQQVLNAQFLDIKAE
>Mature_155_residues
TPATKLLKKAKIEHQVLEYHHDPKAQAYGLEAAEKLGLDQKEVFKTLVVQVDEKELVVGIIPVAEQLSMKLIAKAVKGKK
AKMADPAVVQKTTGYVLGGVSPLGQKKRLKTVIDITAESLESIYVSGGKRGLDIGLAPKDLQQVLNAQFLDIKAE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=56.1290322580645, Blast_Score=170, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16941; Mature: 16810

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPATKLLKKAKIEHQVLEYHHDPKAQAYGLEAAEKLGLDQKEVFKTLVVQVDEKELVVG
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEE
IIPVAEQLSMKLIAKAVKGKKAKMADPAVVQKTTGYVLGGVSPLGQKKRLKTVIDITAES
EECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH
LESIYVSGGKRGLDIGLAPKDLQQVLNAQFLDIKAE
HHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHEEECC
>Mature Secondary Structure 
TPATKLLKKAKIEHQVLEYHHDPKAQAYGLEAAEKLGLDQKEVFKTLVVQVDEKELVVG
CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEE
IIPVAEQLSMKLIAKAVKGKKAKMADPAVVQKTTGYVLGGVSPLGQKKRLKTVIDITAES
EECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH
LESIYVSGGKRGLDIGLAPKDLQQVLNAQFLDIKAE
HHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]