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The map label for this gene is rssA [C]

Identifier: 59712398

GI number: 59712398

Start: 2022653

End: 2023540

Strand: Reverse

Name: rssA [C]

Synonym: VF_1791

Alternate gene names: 59712398

Gene position: 2023540-2022653 (Counterclockwise)

Preceding gene: 59712399

Following gene: 59712395

Centisome position: 69.84

GC content: 38.85

Gene sequence:

>888_bases
ATGAGAAAAAAAACAGTATCGCTTGTTCTTGGTAGCGGAGGGGCAAGAGGGCTTGCTCATATTGGCGTTATCCGTTGGTT
AGAAGAGCATAACTTTGAGATTGTATCGGTTTCAGGCTGCTCAATTGGTACTGTCGTTGGAGGTGTTTATGCTGCAGGTA
AACTTGATGAGTTTGAAGCGTGGATGCGTACAATCACTAAGCTAGATATTGTTTCTTTAATGGATTTTAACTGGGGGAAA
GGCGGTTTAATTAAAGGCGAAAAAGTAATGAATCGTCTTGGGGATATTTTAGGCGATCTTCATATTGAAGACCTTTCTAT
TCCTTATACTGCGGTTGCCGCTGATATCAGTAATGAAAAAGAAGTGTGGTTACAAAAAGGCTCTTTGTTACAAGCTATTA
GAGCGTCTATTTCATTGCCTTTGTATTTAATGCCGATTGAATTTAATGGTAAGACGTTAATTGATGGTGGTGTGCTAAAC
CCAGTACCGATTGCTCCAACGTTTGGTGACCATTCAGATATAACGTTAGCGGTTAATTTAGCAGGAGAAATCAGTCATAG
TATTGATGACTTTGAAGTTAACCAAGTAAATATTTCAGCTGAAGATTCAAAAGAAGAAGACACACCGTTCCATAGAAAAG
TCAGTGACTACTTTGGTTCTTTAACAGCAAAAACATCAAGAATTGATTTAGGGATGTATGATATTGCTAACCAAGCCTTT
GATGCGATGCAAAGTACCATTGCGAGACAAAAGCTAGCATCATACCCGCCAGATATTACGGTTGAAATTGCACGAGATGC
ATGTGGAACATTTGAATTTGAACGTACTGCGGAAATGATAGATTTAGGCTACGAAAGAGCTGAACACGCTTTAAAGCATC
TATTGTAA

Upstream 100 bases:

>100_bases
TAGATATTGGTCTTGCGCCAAAAGATTTACAACAAGTGCTAAATGCGCAGTTTTTGGATATTAAAGCTGAGTAATTCACA
TCATGGAAGGGAGAAAAACC

Downstream 100 bases:

>100_bases
TGGATAAAAACCAATAAAAAAGCTCATACTATTTGTATGAGCTTTTTGTATTTTAATTAGATGTATCATGATTACTGATT
AAATAACTCAGTTTTTCGGT

Product: putative serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRKKTVSLVLGSGGARGLAHIGVIRWLEEHNFEIVSVSGCSIGTVVGGVYAAGKLDEFEAWMRTITKLDIVSLMDFNWGK
GGLIKGEKVMNRLGDILGDLHIEDLSIPYTAVAADISNEKEVWLQKGSLLQAIRASISLPLYLMPIEFNGKTLIDGGVLN
PVPIAPTFGDHSDITLAVNLAGEISHSIDDFEVNQVNISAEDSKEEDTPFHRKVSDYFGSLTAKTSRIDLGMYDIANQAF
DAMQSTIARQKLASYPPDITVEIARDACGTFEFERTAEMIDLGYERAEHALKHLL

Sequences:

>Translated_295_residues
MRKKTVSLVLGSGGARGLAHIGVIRWLEEHNFEIVSVSGCSIGTVVGGVYAAGKLDEFEAWMRTITKLDIVSLMDFNWGK
GGLIKGEKVMNRLGDILGDLHIEDLSIPYTAVAADISNEKEVWLQKGSLLQAIRASISLPLYLMPIEFNGKTLIDGGVLN
PVPIAPTFGDHSDITLAVNLAGEISHSIDDFEVNQVNISAEDSKEEDTPFHRKVSDYFGSLTAKTSRIDLGMYDIANQAF
DAMQSTIARQKLASYPPDITVEIARDACGTFEFERTAEMIDLGYERAEHALKHLL
>Mature_295_residues
MRKKTVSLVLGSGGARGLAHIGVIRWLEEHNFEIVSVSGCSIGTVVGGVYAAGKLDEFEAWMRTITKLDIVSLMDFNWGK
GGLIKGEKVMNRLGDILGDLHIEDLSIPYTAVAADISNEKEVWLQKGSLLQAIRASISLPLYLMPIEFNGKTLIDGGVLN
PVPIAPTFGDHSDITLAVNLAGEISHSIDDFEVNQVNISAEDSKEEDTPFHRKVSDYFGSLTAKTSRIDLGMYDIANQAF
DAMQSTIARQKLASYPPDITVEIARDACGTFEFERTAEMIDLGYERAEHALKHLL

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI148727335, Length=165, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI148727290, Length=165, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=8e-17,
Organism=Escherichia coli, GI226510936, Length=296, Percent_Identity=35.8108108108108, Blast_Score=202, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI71997299, Length=148, Percent_Identity=31.7567567567568, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71997289, Length=148, Percent_Identity=31.7567567567568, Blast_Score=68, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=170, Percent_Identity=32.9411764705882, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571388, Length=166, Percent_Identity=32.5301204819277, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281376913, Length=166, Percent_Identity=31.3253012048193, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32299; Mature: 32299

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKTVSLVLGSGGARGLAHIGVIRWLEEHNFEIVSVSGCSIGTVVGGVYAAGKLDEFEA
CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCHHHHHH
WMRTITKLDIVSLMDFNWGKGGLIKGEKVMNRLGDILGDLHIEDLSIPYTAVAADISNEK
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCHHEEEECCCCCH
EVWLQKGSLLQAIRASISLPLYLMPIEFNGKTLIDGGVLNPVPIAPTFGDHSDITLAVNL
HHHHHCCHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCEEEEEEE
AGEISHSIDDFEVNQVNISAEDSKEEDTPFHRKVSDYFGSLTAKTSRIDLGMYDIANQAF
CCHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH
DAMQSTIARQKLASYPPDITVEIARDACGTFEFERTAEMIDLGYERAEHALKHLL
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKKTVSLVLGSGGARGLAHIGVIRWLEEHNFEIVSVSGCSIGTVVGGVYAAGKLDEFEA
CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCHHHHHH
WMRTITKLDIVSLMDFNWGKGGLIKGEKVMNRLGDILGDLHIEDLSIPYTAVAADISNEK
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCHHEEEECCCCCH
EVWLQKGSLLQAIRASISLPLYLMPIEFNGKTLIDGGVLNPVPIAPTFGDHSDITLAVNL
HHHHHCCHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCEEEEEEE
AGEISHSIDDFEVNQVNISAEDSKEEDTPFHRKVSDYFGSLTAKTSRIDLGMYDIANQAF
CCHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH
DAMQSTIARQKLASYPPDITVEIARDACGTFEFERTAEMIDLGYERAEHALKHLL
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]