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The map label for this gene is ompC [H]

Identifier: 59712402

GI number: 59712402

Start: 2027090

End: 2028139

Strand: Reverse

Name: ompC [H]

Synonym: VF_1795

Alternate gene names: 59712402

Gene position: 2028139-2027090 (Counterclockwise)

Preceding gene: 59712405

Following gene: 59712399

Centisome position: 70.0

GC content: 39.43

Gene sequence:

>1050_bases
ATGAAAAAGACACTTTTAGCACTAGCGGTACCAGCACTATTAATGGCTGGCTCAGCATCAGCTGCAACTGTATATACAGC
AGAAGATGGTTCGACAATCGATGTATATAGCCGTTTAGGTTTCAATATTACTGATCGTAACGATGACGGAGATTCAGTTG
GTAATTTTGATGCTCGTATTGGTTTAGGTGGTTCTCAAGTAGTTAACGATAAAGTTTCTGTAATTGGTTGGGCTGAATAC
CAAGTAAACGCTGCTGAAGCTCGCGGTAATGGTGATTGGTCTCCTCGTTACGTATGGGCAGGGATTGATGCATCTGAAGC
AGGTAAAGTTACATTTGGTCGTGTGGCTTCAGGTATCATTATGCTTTCAGATATTGGTGATGTATTTGCTGCATCTGATG
TGGTTTTAGGTCGTCAATTACAGCTAGTTGATAACTCATCGGCTCAAACATTCCGCCAAGACGGTACTATCCAATATCAA
AACAGCTTTGGTGCTTTTGATATGTCTGTTGCTTACATTTTAGGTAATACAGATTCAGATCAAGATGGTTCTTATAATGC
GGTTGGTCGTTATACATTTGATTTAGGTGATGCTGGTACATTAGCTCCTGTATTAGCATATCAAGCAAACAGCACTGGTG
ATAATGCAATTAACCCTGATGCAGATTACACATTTTGGGGTGCAGGTCTTCAATATAAACTAAATGCATTAACGCTTGGC
GCAATGTATAACCAAGATGAAATTGAAGGTGTTTACTCTGATAAATCAACAGATAAGAGCTACGAATTAACAGCTGTATA
TAACATTAACGATGATTGGACAGCTCGCGTTGGTTACCGTTCTTTAGAAAACAGTGGTGGTGATGAAGCGGAATATAAAG
ATACAACATTCGAAGTTCAATATCATTTAACAGAGCGTTCTTCTATTTACACAAGCTATGTAATGCGTGATGGCGATAAT
GGTAATGTAACAACCGCCGGCCCTGTTATGACTGATTGGAATAACGCTGAAGAAGATTACTACCACTTAGGTCTTCGCTA
TGAATTCTAA

Upstream 100 bases:

>100_bases
GGATTCAGAAAACATGTATGGAATGCAAGAATTCTTGAGTTTGGTGTTCATTAAAAGAGCCATCAAACCAATATAAATTT
AAATATATAGGGTATAGAAC

Downstream 100 bases:

>100_bases
TCTGACCGATAATATTGATACAACTGTTAATCTATAAGGGTGGATTTTTAGTTAACTATCAATCAGGTTAGAAGCTCAAT
CCTCACTGATCCGTCAGTGA

Product: Outer membrane protein C

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKKTLLALAVPALLMAGSASAATVYTAEDGSTIDVYSRLGFNITDRNDDGDSVGNFDARIGLGGSQVVNDKVSVIGWAEY
QVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGIIMLSDIGDVFAASDVVLGRQLQLVDNSSAQTFRQDGTIQYQ
NSFGAFDMSVAYILGNTDSDQDGSYNAVGRYTFDLGDAGTLAPVLAYQANSTGDNAINPDADYTFWGAGLQYKLNALTLG
AMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARVGYRSLENSGGDEAEYKDTTFEVQYHLTERSSIYTSYVMRDGDN
GNVTTAGPVMTDWNNAEEDYYHLGLRYEF

Sequences:

>Translated_349_residues
MKKTLLALAVPALLMAGSASAATVYTAEDGSTIDVYSRLGFNITDRNDDGDSVGNFDARIGLGGSQVVNDKVSVIGWAEY
QVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGIIMLSDIGDVFAASDVVLGRQLQLVDNSSAQTFRQDGTIQYQ
NSFGAFDMSVAYILGNTDSDQDGSYNAVGRYTFDLGDAGTLAPVLAYQANSTGDNAINPDADYTFWGAGLQYKLNALTLG
AMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARVGYRSLENSGGDEAEYKDTTFEVQYHLTERSSIYTSYVMRDGDN
GNVTTAGPVMTDWNNAEEDYYHLGLRYEF
>Mature_349_residues
MKKTLLALAVPALLMAGSASAATVYTAEDGSTIDVYSRLGFNITDRNDDGDSVGNFDARIGLGGSQVVNDKVSVIGWAEY
QVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGIIMLSDIGDVFAASDVVLGRQLQLVDNSSAQTFRQDGTIQYQ
NSFGAFDMSVAYILGNTDSDQDGSYNAVGRYTFDLGDAGTLAPVLAYQANSTGDNAINPDADYTFWGAGLQYKLNALTLG
AMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARVGYRSLENSGGDEAEYKDTTFEVQYHLTERSSIYTSYVMRDGDN
GNVTTAGPVMTDWNNAEEDYYHLGLRYEF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=384, Percent_Identity=27.34375, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37877; Mature: 37877

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLALAVPALLMAGSASAATVYTAEDGSTIDVYSRLGFNITDRNDDGDSVGNFDARI
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEHHCCCEEECCCCCCCCCCCCEEEE
GLGGSQVVNDKVSVIGWAEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGII
ECCCCCEECCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHCCEE
MLSDIGDVFAASDVVLGRQLQLVDNSSAQTFRQDGTIQYQNSFGAFDMSVAYILGNTDSD
EEECCCCHHHHCCEEECCEEEEEECCCCHHHHCCCEEEECCCCCCEEEEEEEEEECCCCC
QDGSYNAVGRYTFDLGDAGTLAPVLAYQANSTGDNAINPDADYTFWGAGLQYKLNALTLG
CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEE
AMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARVGYRSLENSGGDEAEYKDTTFEVQ
EECCHHHCCEEECCCCCCCCEEEEEEEECCCCCEEEECCHHHCCCCCCCCCCCCCEEEEE
YHLTERSSIYTSYVMRDGDNGNVTTAGPVMTDWNNAEEDYYHLGLRYEF
EEEECCCCEEEEEEEEECCCCCEEECCCEEECCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKTLLALAVPALLMAGSASAATVYTAEDGSTIDVYSRLGFNITDRNDDGDSVGNFDARI
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEHHCCCEEECCCCCCCCCCCCEEEE
GLGGSQVVNDKVSVIGWAEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGII
ECCCCCEECCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHCCEE
MLSDIGDVFAASDVVLGRQLQLVDNSSAQTFRQDGTIQYQNSFGAFDMSVAYILGNTDSD
EEECCCCHHHHCCEEECCEEEEEECCCCHHHHCCCEEEECCCCCCEEEEEEEEEECCCCC
QDGSYNAVGRYTFDLGDAGTLAPVLAYQANSTGDNAINPDADYTFWGAGLQYKLNALTLG
CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEE
AMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARVGYRSLENSGGDEAEYKDTTFEVQ
EECCHHHCCEEECCCCCCCCEEEEEEEECCCCCEEEECCHHHCCCCCCCCCCCCCEEEEE
YHLTERSSIYTSYVMRDGDNGNVTTAGPVMTDWNNAEEDYYHLGLRYEF
EEEECCCCEEEEEEEEECCCCCEEECCCEEECCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180 [H]