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The map label for this gene is torD

Identifier: 59712178

GI number: 59712178

Start: 1760038

End: 1760685

Strand: Direct

Name: torD

Synonym: VF_1571

Alternate gene names: 59712178

Gene position: 1760038-1760685 (Clockwise)

Preceding gene: 59712170

Following gene: 59712179

Centisome position: 60.74

GC content: 36.11

Gene sequence:

>648_bases
ATGAACGAACTTACTGCGTTTAATGAGCAACGCGCTGAAATATACTGGTGGCTATCTAGCCTACTATCAGCAGAATTAAC
GACAGAACAACTTGAGCAATATGGCAGTTTTGAAGTACGTACTTTTCTATCTAATTTAGCTGAAACACCAGAACTAAGTG
ATTCAGTTAATGCATTAATTGAAAAATTAAATGCCGTGCAAGGTCGTGAAGATGCACAACTTGAACTTTCTGCTGATTTT
TGTGATGCCTTTTTAGGCTCAGATAAAAGTAGTGCGCTGCCGTACGCTTCTATGTATCTTGACAAATCAGGTCTACTAAA
CGCAAAACCTGCACAAGATATGCGTGAATGGCTTACAAAATATAATATTGCACAAAAAGCTGAATTTAATGAGCCAGCTG
ACCACATTGCCATTGAATTAGATTTTTTAGGTAATTTAATTGTGATGACAAATCAGCAAGTTTCTGAAGATGAATTTGAA
GCTTATATGAGTGCTCAACTAACCTTTATTAATGAGCAACTGTTAAGTTGGACACCTCGATTTAATGAAATTTGCATCGA
AAGAGATAAATTTGGTTTCTATGCAGCAGTAACAGGCTTACTTGTTACATTCCTAAAGCTAGATGTGAAATTTCTTGCTG
GCGAATAA

Upstream 100 bases:

>100_bases
CTTTACAAACATCTTTATACACCCTGTTAATGATAGGTGCTATTCCTTTTCATACTTATCCAGTACAATTTAGGAATAAT
TTTTTTGGAGCATAAGATAA

Downstream 100 bases:

>100_bases
TATAAGATAATTGCTTTTATTATTTATGTTAAAAAATATGTGATATAAATCAAAAGCAATATCAAAATTTATTAAATCAG
TAATTGTTTGCACTATGCTT

Product: chaperone protein TorD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNELTAFNEQRAEIYWWLSSLLSAELTTEQLEQYGSFEVRTFLSNLAETPELSDSVNALIEKLNAVQGREDAQLELSADF
CDAFLGSDKSSALPYASMYLDKSGLLNAKPAQDMREWLTKYNIAQKAEFNEPADHIAIELDFLGNLIVMTNQQVSEDEFE
AYMSAQLTFINEQLLSWTPRFNEICIERDKFGFYAAVTGLLVTFLKLDVKFLAGE

Sequences:

>Translated_215_residues
MNELTAFNEQRAEIYWWLSSLLSAELTTEQLEQYGSFEVRTFLSNLAETPELSDSVNALIEKLNAVQGREDAQLELSADF
CDAFLGSDKSSALPYASMYLDKSGLLNAKPAQDMREWLTKYNIAQKAEFNEPADHIAIELDFLGNLIVMTNQQVSEDEFE
AYMSAQLTFINEQLLSWTPRFNEICIERDKFGFYAAVTGLLVTFLKLDVKFLAGE
>Mature_215_residues
MNELTAFNEQRAEIYWWLSSLLSAELTTEQLEQYGSFEVRTFLSNLAETPELSDSVNALIEKLNAVQGREDAQLELSADF
CDAFLGSDKSSALPYASMYLDKSGLLNAKPAQDMREWLTKYNIAQKAEFNEPADHIAIELDFLGNLIVMTNQQVSEDEFE
AYMSAQLTFINEQLLSWTPRFNEICIERDKFGFYAAVTGLLVTFLKLDVKFLAGE

Specific function: Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. TorD subfamily

Homologues:

Organism=Escherichia coli, GI1787232, Length=209, Percent_Identity=37.3205741626794, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TORD_VIBF1 (Q5E4I0)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_204954.1
- ProteinModelPortal:   Q5E4I0
- SMR:   Q5E4I0
- STRING:   Q5E4I0
- GeneID:   3278837
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_1571
- NMPDR:   fig|312309.3.peg.1571
- eggNOG:   COG3381
- HOGENOM:   HBG662677
- OMA:   EPADHIA
- PhylomeDB:   Q5E4I0
- ProtClustDB:   PRK04976
- BioCyc:   VFIS312309:VF1571-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01150
- InterPro:   IPR023069
- InterPro:   IPR020945

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 24403; Mature: 24403

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELTAFNEQRAEIYWWLSSLLSAELTTEQLEQYGSFEVRTFLSNLAETPELSDSVNALI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
EKLNAVQGREDAQLELSADFCDAFLGSDKSSALPYASMYLDKSGLLNAKPAQDMREWLTK
HHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
YNIAQKAEFNEPADHIAIELDFLGNLIVMTNQQVSEDEFEAYMSAQLTFINEQLLSWTPR
HCHHHHCCCCCCHHHEEEEHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
FNEICIERDKFGFYAAVTGLLVTFLKLDVKFLAGE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNELTAFNEQRAEIYWWLSSLLSAELTTEQLEQYGSFEVRTFLSNLAETPELSDSVNALI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
EKLNAVQGREDAQLELSADFCDAFLGSDKSSALPYASMYLDKSGLLNAKPAQDMREWLTK
HHHHHHCCCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
YNIAQKAEFNEPADHIAIELDFLGNLIVMTNQQVSEDEFEAYMSAQLTFINEQLLSWTPR
HCHHHHCCCCCCHHHEEEEHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
FNEICIERDKFGFYAAVTGLLVTFLKLDVKFLAGE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA