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The map label for this gene is yohK [H]

Identifier: 59712091

GI number: 59712091

Start: 1642464

End: 1643138

Strand: Direct

Name: yohK [H]

Synonym: VF_1484

Alternate gene names: 59712091

Gene position: 1642464-1643138 (Clockwise)

Preceding gene: 59712090

Following gene: 59712092

Centisome position: 56.68

GC content: 42.81

Gene sequence:

>675_bases
ATGTGGGTCATTCTTACGCTTATCGTTTTTTACTCTGCTCGTTGGTTTGCAAAACGTTTCCCTCACCCAGTGAATAACCC
GTTATTGCTGAGTGTGTGTATTGTTATTCCTATCTTGATGGTTCTGCATGTACCTTACGAAACCTATTATGCTGATAATG
CTTTCCTAAGTTACTTGTTACAGCCTGCGGTGGTTGCACTTGCTTATCCTTTATATGAGCAATTACCTCATATTCGAGCG
AACTGGAAAATCATCTTGCTTGCATGTAGTGTGGGGTCGTTGTTCTCAATGATCTCTGGTGCGTTCCTTGCGGTTTGGAT
GGGAGCCGATATGCAACTGGTTGCAAGTATTTTACCAAAATCAGTGACAACGCCTATTGCTATGGCTATTTCAAGTCAGC
TTGAAGGTGAAGCGGCAATCGCAGCAATCTTAGTACTTCTGGCTGGTTTGATGGGAGCAATTTTTGCTTACCCAATTTAT
AACATGTTGGGTATTAAGAGCTCACTTGCTCGTGGTCTAACAATGGGGAATGTCTCTCACGCATTGGGTACAGCTCAAGC
AGCTGAAGAGAATCCACAAGATGCCGCATTCAGTTCATTAGCCCTAGTTATTTGTGGGATCATCACTTCTCTCGTTGCAC
CGATTATCTACTCCTTCATGGTAATGATGAAATAA

Upstream 100 bases:

>100_bases
ACAATGCAATTCCAATTATTGTGAGTACGGCGGGTGGTTCATTATTAGTATTGGTTTGCTTAGCACTCTTTATCGACAAA
ATTGATAGAGGTAACAGCTA

Downstream 100 bases:

>100_bases
TCGCGCTCAAAACAGCACCAATATGGTGTGACTTCTCTCTCATTGATGTAATTTATGTAACTTTACATCAATGAGTGTGA
TTTTGATCTATGTTTCCAGC

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MWVILTLIVFYSARWFAKRFPHPVNNPLLLSVCIVIPILMVLHVPYETYYADNAFLSYLLQPAVVALAYPLYEQLPHIRA
NWKIILLACSVGSLFSMISGAFLAVWMGADMQLVASILPKSVTTPIAMAISSQLEGEAAIAAILVLLAGLMGAIFAYPIY
NMLGIKSSLARGLTMGNVSHALGTAQAAEENPQDAAFSSLALVICGIITSLVAPIIYSFMVMMK

Sequences:

>Translated_224_residues
MWVILTLIVFYSARWFAKRFPHPVNNPLLLSVCIVIPILMVLHVPYETYYADNAFLSYLLQPAVVALAYPLYEQLPHIRA
NWKIILLACSVGSLFSMISGAFLAVWMGADMQLVASILPKSVTTPIAMAISSQLEGEAAIAAILVLLAGLMGAIFAYPIY
NMLGIKSSLARGLTMGNVSHALGTAQAAEENPQDAAFSSLALVICGIITSLVAPIIYSFMVMMK
>Mature_224_residues
MWVILTLIVFYSARWFAKRFPHPVNNPLLLSVCIVIPILMVLHVPYETYYADNAFLSYLLQPAVVALAYPLYEQLPHIRA
NWKIILLACSVGSLFSMISGAFLAVWMGADMQLVASILPKSVTTPIAMAISSQLEGEAAIAAILVLLAGLMGAIFAYPIY
NMLGIKSSLARGLTMGNVSHALGTAQAAEENPQDAAFSSLALVICGIITSLVAPIIYSFMVMMK

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=213, Percent_Identity=53.0516431924883, Blast_Score=231, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 24255; Mature: 24255

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVILTLIVFYSARWFAKRFPHPVNNPLLLSVCIVIPILMVLHVPYETYYADNAFLSYLL
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
QPAVVALAYPLYEQLPHIRANWKIILLACSVGSLFSMISGAFLAVWMGADMQLVASILPK
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCH
SVTTPIAMAISSQLEGEAAIAAILVLLAGLMGAIFAYPIYNMLGIKSSLARGLTMGNVSH
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHH
ALGTAQAAEENPQDAAFSSLALVICGIITSLVAPIIYSFMVMMK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWVILTLIVFYSARWFAKRFPHPVNNPLLLSVCIVIPILMVLHVPYETYYADNAFLSYLL
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
QPAVVALAYPLYEQLPHIRANWKIILLACSVGSLFSMISGAFLAVWMGADMQLVASILPK
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCH
SVTTPIAMAISSQLEGEAAIAAILVLLAGLMGAIFAYPIYNMLGIKSSLARGLTMGNVSH
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHH
ALGTAQAAEENPQDAAFSSLALVICGIITSLVAPIIYSFMVMMK
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]