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The map label for this gene is tonB1 [H]

Identifier: 59711832

GI number: 59711832

Start: 1358297

End: 1359061

Strand: Reverse

Name: tonB1 [H]

Synonym: VF_1225

Alternate gene names: 59711832

Gene position: 1359061-1358297 (Counterclockwise)

Preceding gene: 59711841

Following gene: 59711831

Centisome position: 46.9

GC content: 39.22

Gene sequence:

>765_bases
ATGGAGACATTCGTGCTGAACTTTCGTTATCTAGCTGCAGCTGGTATTTCATTAGCTATTCATACCGCGCTTATTTGGTC
TGTTCCTGAAAAAAAAGCCTTTGCTATGCCTACCGGTAGTACTTCATCACAAGTAAACATCCAGTTTGTCGCACCAAGTG
TTCCTACTCCTCAGTCAGTACAAACGAAAAAAAATGAGGTAACAAAACCGAAAGAACAACCAAAGCAACAAACCACAGTT
GAAAAAACAGTTCAAAAACAAGTGGTGAAAAAGAAACCCGTACAATCTAAGCAAAAGCCTAAACCAAAAAAGAAAATGGT
AAAAAAACCAACGATTTCAAAGCCAATTGAACCAGAAAAAAAGATTCTTAAAGAAAAGGCAGAAACTAAGCCAACAACTA
AAACGGCTAAGAAAACAGACAAACCTGTAGAAAAAGAGTCAACAGCAAAACCTGTTGCTTCTAAATCAGGGGCAACAGAA
AAACCACAATTAGTCCAAAAACCGAATTTCTTAAAGCGTCCTAATGCACCACGTTACCCTCGCATCGCGCAACGTAAAGG
CATTGAAGGTACTGCGCTATATGAAATTTGGCTAAATGAAAACGGAAAACAAATTAAACAAGAGTTAATCACCTCATCTG
GCGCACAAGTTCTCGATGAAGCCGCTCTTAATGCGATTCGTGATTGGCAATTTTCACCTCAAGTTATCAATGGCCAAGCG
ATTGCACACCGAGTGCAGATCCCTGTCAGATTTTCACTAAATTAA

Upstream 100 bases:

>100_bases
TTTTTACATCATAAAGTATTTTTTAATGAGAATGCAATTGATAATTGATCTCATTATCGTTTTGTTTATAATGTTGTCAT
CTTAAAAAGTACTGAATTAA

Downstream 100 bases:

>100_bases
TCAGTTATACCGGATTTAACTATGCTTAACTTTTCACACTTATATTCGCAACTTGGCATTATGGCTCTACCGCTATTAGG
CTGCTCATTACTCACTCTTG

Product: TonB1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
METFVLNFRYLAAAGISLAIHTALIWSVPEKKAFAMPTGSTSSQVNIQFVAPSVPTPQSVQTKKNEVTKPKEQPKQQTTV
EKTVQKQVVKKKPVQSKQKPKPKKKMVKKPTISKPIEPEKKILKEKAETKPTTKTAKKTDKPVEKESTAKPVASKSGATE
KPQLVQKPNFLKRPNAPRYPRIAQRKGIEGTALYEIWLNENGKQIKQELITSSGAQVLDEAALNAIRDWQFSPQVINGQA
IAHRVQIPVRFSLN

Sequences:

>Translated_254_residues
METFVLNFRYLAAAGISLAIHTALIWSVPEKKAFAMPTGSTSSQVNIQFVAPSVPTPQSVQTKKNEVTKPKEQPKQQTTV
EKTVQKQVVKKKPVQSKQKPKPKKKMVKKPTISKPIEPEKKILKEKAETKPTTKTAKKTDKPVEKESTAKPVASKSGATE
KPQLVQKPNFLKRPNAPRYPRIAQRKGIEGTALYEIWLNENGKQIKQELITSSGAQVLDEAALNAIRDWQFSPQVINGQA
IAHRVQIPVRFSLN
>Mature_254_residues
METFVLNFRYLAAAGISLAIHTALIWSVPEKKAFAMPTGSTSSQVNIQFVAPSVPTPQSVQTKKNEVTKPKEQPKQQTTV
EKTVQKQVVKKKPVQSKQKPKPKKKMVKKPTISKPIEPEKKILKEKAETKPTTKTAKKTDKPVEKESTAKPVASKSGATE
KPQLVQKPNFLKRPNAPRYPRIAQRKGIEGTALYEIWLNENGKQIKQELITSSGAQVLDEAALNAIRDWQFSPQVINGQA
IAHRVQIPVRFSLN

Specific function: Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requirin

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein; Periplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003538
- InterPro:   IPR006260 [H]

Pfam domain/function: PF03544 TonB [H]

EC number: NA

Molecular weight: Translated: 28318; Mature: 28318

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METFVLNFRYLAAAGISLAIHTALIWSVPEKKAFAMPTGSTSSQVNIQFVAPSVPTPQSV
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCH
QTKKNEVTKPKEQPKQQTTVEKTVQKQVVKKKPVQSKQKPKPKKKMVKKPTISKPIEPEK
HHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHH
KILKEKAETKPTTKTAKKTDKPVEKESTAKPVASKSGATEKPQLVQKPNFLKRPNAPRYP
HHHHHHHHCCCCCHHHHHCCCCCCHHHCCCCCHHCCCCCCCCHHHCCCCHHCCCCCCCCC
RIAQRKGIEGTALYEIWLNENGKQIKQELITSSGAQVLDEAALNAIRDWQFSPQVINGQA
CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCE
IAHRVQIPVRFSLN
EEEEEEEEEEEECC
>Mature Secondary Structure
METFVLNFRYLAAAGISLAIHTALIWSVPEKKAFAMPTGSTSSQVNIQFVAPSVPTPQSV
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCH
QTKKNEVTKPKEQPKQQTTVEKTVQKQVVKKKPVQSKQKPKPKKKMVKKPTISKPIEPEK
HHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHH
KILKEKAETKPTTKTAKKTDKPVEKESTAKPVASKSGATEKPQLVQKPNFLKRPNAPRYP
HHHHHHHHCCCCCHHHHHCCCCCCHHHCCCCCHHCCCCCCCCHHHCCCCHHCCCCCCCCC
RIAQRKGIEGTALYEIWLNENGKQIKQELITSSGAQVLDEAALNAIRDWQFSPQVINGQA
CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCE
IAHRVQIPVRFSLN
EEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]