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The map label for this gene is ycbB [H]

Identifier: 59711764

GI number: 59711764

Start: 1282826

End: 1284373

Strand: Direct

Name: ycbB [H]

Synonym: VF_1157

Alternate gene names: 59711764

Gene position: 1282826-1284373 (Clockwise)

Preceding gene: 59711763

Following gene: 59711765

Centisome position: 44.27

GC content: 35.79

Gene sequence:

>1548_bases
ATGGGACGATTGATAATTATTCTTTTTGTACTTTTTTCCTCTTTATGCAAGCCTATTCATGCCGCTTTGATTGATACCTA
CATAGAGTATTATCAAGAACAACTTTTTTATCCTGAAATAACTCAACGCCTTTATAACGATGATACTTTAAAGTGGAAGT
CTCCCTTAGCAAGAAAATACCTTGAGAATCAACTCGCACTTTTGGCATTAGCCCAATTAAATGACTCTGTCACTGCTCGT
TACTATCAATTACAAGGAATGGATGGTGTTGAGTACGATATTTTAGCAACCGATACATTAATTTATCTCAGAACCTATCA
ATCTAGTGTTTCAGCAAAAGGGAAGAAATGGTTTTTTGGTGGGCGAATAGAAGCATCATTACCTAAACCACAACCTGAAA
CAATCAAAGGAATAACAAAAGCAATTGAAGAACGTGATTTAGTGAGTTTTACTCATGCTTTGCGACCTAGCTCTGATCAA
TATGAGGAGCTCTATCAGCGTCTATTTCATTATTATCAACCCTATGAAGACAGTGAAAGTGTATTCATTAAAGAGCGCTT
GATCAGACCAAACCAACTCACTGATGTGAACGCCATTATTTATCGTTTACAAGTTTCTGGTGAAATTAATCATCAAGAAG
CAGACATGTTATTAAGGCAAAGTAATGATCATTATGATTCATCCTTGGTTTTAATCATTAAAGAGTTTCAGAAAAGGCAT
GGTTTAAAACAAGATGGGATAATCGGCCCTAAAACCTTACATTGGCTCAATATGACAGCGAAAGAGCGTGTACGTATCAT
GGCATTAAATATTCAGCGTTTGCGCTTATGGGAGAATAAGAACTCGAATTTCGTATTAGTGAATATTCCGTCCTACGAGA
TGGCTTATTGGCAAGAAGGAGAGTTGGTGTTTACGAGTAAAGTCATTGTTGGTAAACCTGAAAGGCGAACACCTATTTTC
ACTACTAGGTTAAATGCAATTGTGTTTAATCCTGAATGGAAAGTACCAACAAAAATAATGCGAGAAGATATTTTACCAAA
GGCATTAAATAATAAAGATTTTTTACAATCACAAAATTTCGAGATTATTCCTACATGGCTAAGTAAAGAGGTTATCTCTA
TTGATGATATTGATTGGGAGCAGGTGAATGTAGAGACTTTTCCTTATAAGTTAAAGCAGAAATCAGGTAACACCAATGCA
CTGGGACGATATAAATTTAATACACCTAATCGAAATGCCATTTATCTGCATGATACGCCATCTCGTTCACTATTTAGTAA
GCAGCATAGAGCATACAGTTCAGGATGCATTCGGGTTGAAAAGGCCTCGGAGTTTGCCCAATTGCTTATGAAGGAATCTC
ACTTCTCAACTCAAGATTATAAGGATTATCATGAGTTACCAGAGACAAGCAAAGTTTCGTTGGATCAGCAGATATCCGTT
TATACCATATATCAAACTTCCTGGGTTGGAGAAGATAACCAAGTGCAGTTTAGAATGATATATACAAATACGATGAATGG
AGTAAAAGTCGAAATTGATAAAAATTAG

Upstream 100 bases:

>100_bases
AAACGTTTGTTTAAAGCCAGTTGTTATTCAACTGGCTTTTTTGCTATTTGCGTAATGAAGTCTAAGATCAATATATACCA
ATCATGTAATAGGTGCTGAT

Downstream 100 bases:

>100_bases
CTGTTTGAATAGTGATAAAAAATCATTTACTGTTCAATAAGTAAGCTAAATTGGGCTCATAAGGCAGATAAAATTAACTG
TTTATTATTTGACCAATTGA

Product: carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MGRLIIILFVLFSSLCKPIHAALIDTYIEYYQEQLFYPEITQRLYNDDTLKWKSPLARKYLENQLALLALAQLNDSVTAR
YYQLQGMDGVEYDILATDTLIYLRTYQSSVSAKGKKWFFGGRIEASLPKPQPETIKGITKAIEERDLVSFTHALRPSSDQ
YEELYQRLFHYYQPYEDSESVFIKERLIRPNQLTDVNAIIYRLQVSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRH
GLKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLRLWENKNSNFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIF
TTRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNFEIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNA
LGRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYHELPETSKVSLDQQISV
YTIYQTSWVGEDNQVQFRMIYTNTMNGVKVEIDKN

Sequences:

>Translated_515_residues
MGRLIIILFVLFSSLCKPIHAALIDTYIEYYQEQLFYPEITQRLYNDDTLKWKSPLARKYLENQLALLALAQLNDSVTAR
YYQLQGMDGVEYDILATDTLIYLRTYQSSVSAKGKKWFFGGRIEASLPKPQPETIKGITKAIEERDLVSFTHALRPSSDQ
YEELYQRLFHYYQPYEDSESVFIKERLIRPNQLTDVNAIIYRLQVSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRH
GLKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLRLWENKNSNFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIF
TTRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNFEIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNA
LGRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYHELPETSKVSLDQQISV
YTIYQTSWVGEDNQVQFRMIYTNTMNGVKVEIDKN
>Mature_514_residues
GRLIIILFVLFSSLCKPIHAALIDTYIEYYQEQLFYPEITQRLYNDDTLKWKSPLARKYLENQLALLALAQLNDSVTARY
YQLQGMDGVEYDILATDTLIYLRTYQSSVSAKGKKWFFGGRIEASLPKPQPETIKGITKAIEERDLVSFTHALRPSSDQY
EELYQRLFHYYQPYEDSESVFIKERLIRPNQLTDVNAIIYRLQVSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRHG
LKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLRLWENKNSNFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIFT
TRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNFEIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNAL
GRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYHELPETSKVSLDQQISVY
TIYQTSWVGEDNQVQFRMIYTNTMNGVKVEIDKN

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=490, Percent_Identity=32.4489795918367, Blast_Score=283, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 60379; Mature: 60247

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLIIILFVLFSSLCKPIHAALIDTYIEYYQEQLFYPEITQRLYNDDTLKWKSPLARKY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHH
LENQLALLALAQLNDSVTARYYQLQGMDGVEYDILATDTLIYLRTYQSSVSAKGKKWFFG
HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCEEEEEEEHHHHHCCCCCEEEEC
GRIEASLPKPQPETIKGITKAIEERDLVSFTHALRPSSDQYEELYQRLFHYYQPYEDSES
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
VFIKERLIRPNQLTDVNAIIYRLQVSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRH
EEHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
GLKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLRLWENKNSNFVLVNIPSYEMAYWQEG
CCCCCCCCCCCEEEEECCCHHHCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEEECC
ELVFTSKVIVGKPERRTPIFTTRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNF
CEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHCCHHHCCCCHHHCCCCC
EIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNALGRYKFNTPNRNAIYLHDTP
EEEEHHHCCCEEEECCCCCCEEEEEECCEEEECCCCCCCCEEEEEECCCCCCEEEEECCC
SRSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYHELPETSKVSLDQQISV
CHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEE
YTIYQTSWVGEDNQVQFRMIYTNTMNGVKVEIDKN
EEEEEEEECCCCCCEEEEEEEECCCCCEEEEEECC
>Mature Secondary Structure 
GRLIIILFVLFSSLCKPIHAALIDTYIEYYQEQLFYPEITQRLYNDDTLKWKSPLARKY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHH
LENQLALLALAQLNDSVTARYYQLQGMDGVEYDILATDTLIYLRTYQSSVSAKGKKWFFG
HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCEEEEEEEHHHHHCCCCCEEEEC
GRIEASLPKPQPETIKGITKAIEERDLVSFTHALRPSSDQYEELYQRLFHYYQPYEDSES
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
VFIKERLIRPNQLTDVNAIIYRLQVSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRH
EEHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
GLKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLRLWENKNSNFVLVNIPSYEMAYWQEG
CCCCCCCCCCCEEEEECCCHHHCEEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEEECC
ELVFTSKVIVGKPERRTPIFTTRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNF
CEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHCCHHHCCCCHHHCCCCC
EIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNALGRYKFNTPNRNAIYLHDTP
EEEEHHHCCCEEEECCCCCCEEEEEECCEEEECCCCCCCCEEEEEECCCCCCEEEEECCC
SRSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYHELPETSKVSLDQQISV
CHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEE
YTIYQTSWVGEDNQVQFRMIYTNTMNGVKVEIDKN
EEEEEEEECCCCCCEEEEEEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]