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The map label for this gene is sdhC [H]

Identifier: 59711426

GI number: 59711426

Start: 898683

End: 899084

Strand: Direct

Name: sdhC [H]

Synonym: VF_0819

Alternate gene names: 59711426

Gene position: 898683-899084 (Clockwise)

Preceding gene: 59711424

Following gene: 59711427

Centisome position: 31.02

GC content: 42.29

Gene sequence:

>402_bases
ATGGAGCTGAGTGAGCCCCTTGTGAAAGTTAAAAAGTCAAGACCTGTCAACCTAGATCTACAAACGATCCGTTTTCCTAT
AACGGCTATCGCCTCAATCTTGCATCGCGTGAGTGGTGTAATTACTTTTGTTTCTGTCGGAATATTGCTTTGGTTGCTCA
ACCTATCGCTTTCTTCACCTATTGGATTTGCACAAGCCGCTGATTATGTCGATGGCTTTTTTGTGACTTTCATTATGTGG
GGAATTCTGACTGCTCTTGCTTACCATATTGTCGTAGGTATTCGTCATTTACTGATGGATATGGGCTATTTTGAAGAGCT
CGAGTCAGGCACTCAAAGTGCTAAAGTTGCGTTTGCAATTACAGCCGTATTGTCACTTTTAGCAGGAGTATTGGTATGGT
AG

Upstream 100 bases:

>100_bases
TAGCTCAATAAAGAGATGTTGCTCACATCAAAAGTTGCATAAATGTTAAATCTAGGCGGTTTTTGATAGATCGGAGGTAT
CTATAACAATAAAATGCTCA

Downstream 100 bases:

>100_bases
CTAATGTTTCGTCATTTGGTCGTAACGGTGTACACGATTTTATTCTGATTCGTGCCAGTGCGATCATTCTTACTCTATAC
ACATTATACATTGTTGGCTT

Product: succinate dehydrogenase cytochrome b556 large membrane subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MELSEPLVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQAADYVDGFFVTFIMW
GILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAITAVLSLLAGVLVW

Sequences:

>Translated_133_residues
MELSEPLVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQAADYVDGFFVTFIMW
GILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAITAVLSLLAGVLVW
>Mature_133_residues
MELSEPLVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQAADYVDGFFVTFIMW
GILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAITAVLSLLAGVLVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=126, Percent_Identity=77.7777777777778, Blast_Score=196, Evalue=6e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14565; Mature: 14565

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSEPLVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSP
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IGFAQAADYVDGFFVTFIMWGILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TAVLSLLAGVLVW
HHHHHHHHHHHCC
>Mature Secondary Structure
MELSEPLVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSP
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IGFAQAADYVDGFFVTFIMWGILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TAVLSLLAGVLVW
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]