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The map label for this gene is sdhD [H]

Identifier: 59711427

GI number: 59711427

Start: 899078

End: 899425

Strand: Direct

Name: sdhD [H]

Synonym: VF_0820

Alternate gene names: 59711427

Gene position: 899078-899425 (Clockwise)

Preceding gene: 59711426

Following gene: 59711428

Centisome position: 31.03

GC content: 39.37

Gene sequence:

>348_bases
ATGGTAGCTAATGTTTCGTCATTTGGTCGTAACGGTGTACACGATTTTATTCTGATTCGTGCCAGTGCGATCATTCTTAC
TCTATACACATTATACATTGTTGGCTTTTGTGCCTTTGGGCCAGAGTTAACGTATTTGTCATGGACTAACTTCTTTGGTG
GACTATTTACAAAAGCGTTTACCATGTTAGCGCTATTGTCCATTCTAATTCATGCATGGATTGGTTTATGGCAAGTGCTT
ACTGATTATATCAAACCAGTTATGTTGCGTGCTCTGCTTCAGCTTGGGTTGGTATCTGTTCTGTTTGTCTATTTCTTCTC
TGGTTTAATTATAGTGTGGGGTGTGTAG

Upstream 100 bases:

>100_bases
TGGATATGGGCTATTTTGAAGAGCTCGAGTCAGGCACTCAAAGTGCTAAAGTTGCGTTTGCAATTACAGCCGTATTGTCA
CTTTTAGCAGGAGTATTGGT

Downstream 100 bases:

>100_bases
TGAGTAGTATTCCTGTTAGAGAATTTGATGCCGTTGTAATCGGTGCTGGTGGTGCAGGTATGCGAGCTGCGCTGCAAATT
TCAGAACAAGGCCTTTCTTG

Product: succinate dehydrogenase, membrane subunit, binds cytochrome b556

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVANVSSFGRNGVHDFILIRASAIILTLYTLYIVGFCAFGPELTYLSWTNFFGGLFTKAFTMLALLSILIHAWIGLWQVL
TDYIKPVMLRALLQLGLVSVLFVYFFSGLIIVWGV

Sequences:

>Translated_115_residues
MVANVSSFGRNGVHDFILIRASAIILTLYTLYIVGFCAFGPELTYLSWTNFFGGLFTKAFTMLALLSILIHAWIGLWQVL
TDYIKPVMLRALLQLGLVSVLFVYFFSGLIIVWGV
>Mature_115_residues
MVANVSSFGRNGVHDFILIRASAIILTLYTLYIVGFCAFGPELTYLSWTNFFGGLFTKAFTMLALLSILIHAWIGLWQVL
TDYIKPVMLRALLQLGLVSVLFVYFFSGLIIVWGV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=115, Percent_Identity=64.3478260869565, Blast_Score=142, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12901; Mature: 12901

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVANVSSFGRNGVHDFILIRASAIILTLYTLYIVGFCAFGPELTYLSWTNFFGGLFTKAF
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
TMLALLSILIHAWIGLWQVLTDYIKPVMLRALLQLGLVSVLFVYFFSGLIIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVANVSSFGRNGVHDFILIRASAIILTLYTLYIVGFCAFGPELTYLSWTNFFGGLFTKAF
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
TMLALLSILIHAWIGLWQVLTDYIKPVMLRALLQLGLVSVLFVYFFSGLIIVWGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]