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The map label for this gene is ygdD [C]

Identifier: 59711199

GI number: 59711199

Start: 650188

End: 650574

Strand: Direct

Name: ygdD [C]

Synonym: VF_0592

Alternate gene names: 59711199

Gene position: 650188-650574 (Clockwise)

Preceding gene: 59711198

Following gene: 228873812

Centisome position: 22.44

GC content: 37.98

Gene sequence:

>387_bases
ATGAATAGTCGTTTATGTTTATTGATTGCGAGTATTAGTGGAGCACTAACTGTTGGGCTAGGGGCATTTGGTGCTCATGG
TTTAAAAGCGTTTTTATCTCCCTATCTACTTGATGTATATGAAACTGCAGTGCAATATCAAATGTGGCATACCCTTGCGT
TGTTTGGATGTGGAATTTTGTTGAGAAATTCATTTTCAAAAGGGGTATCATACGCCGCCTTGTTATTTACCATTGGAATG
CTATTTTTCAGTGGAAGTTTATATGCGTTAGTGTTCACCGGAATAAAATGGTTTGGTCCAATTACTCCATTAGGTGGATT
CTGTTTTATTATCGGTTGGTTAACGCTGGCTGTTTCAACTTATCGTTTGACTGAGGTTTCAAAGTGA

Upstream 100 bases:

>100_bases
TATCTTGTATGTAATGAAAAACAGGCTGATACCGGTCGTATTGCAACGTTTAGAGAGTGGATTTTAAGTAAAGCTCGTAG
CGAACAAGAGATTGTGGATG

Downstream 100 bases:

>100_bases
AACAAGTAATGTTCTATTGTCGCTCTGGTTTTGAAAAAGAGTGTGCAGGTGAGATCCAAGATAAAGCCACTCAACTAGAA
GTGTTTGGTTTTCCTCGCCT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNSRLCLLIASISGALTVGLGAFGAHGLKAFLSPYLLDVYETAVQYQMWHTLALFGCGILLRNSFSKGVSYAALLFTIGM
LFFSGSLYALVFTGIKWFGPITPLGGFCFIIGWLTLAVSTYRLTEVSK

Sequences:

>Translated_128_residues
MNSRLCLLIASISGALTVGLGAFGAHGLKAFLSPYLLDVYETAVQYQMWHTLALFGCGILLRNSFSKGVSYAALLFTIGM
LFFSGSLYALVFTGIKWFGPITPLGGFCFIIGWLTLAVSTYRLTEVSK
>Mature_128_residues
MNSRLCLLIASISGALTVGLGAFGAHGLKAFLSPYLLDVYETAVQYQMWHTLALFGCGILLRNSFSKGVSYAALLFTIGM
LFFSGSLYALVFTGIKWFGPITPLGGFCFIIGWLTLAVSTYRLTEVSK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=125, Percent_Identity=35.2, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13877; Mature: 13877

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRLCLLIASISGALTVGLGAFGAHGLKAFLSPYLLDVYETAVQYQMWHTLALFGCGIL
CCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNSFSKGVSYAALLFTIGMLFFSGSLYALVFTGIKWFGPITPLGGFCFIIGWLTLAVST
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YRLTEVSK
HHHHCCCC
>Mature Secondary Structure
MNSRLCLLIASISGALTVGLGAFGAHGLKAFLSPYLLDVYETAVQYQMWHTLALFGCGIL
CCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNSFSKGVSYAALLFTIGMLFFSGSLYALVFTGIKWFGPITPLGGFCFIIGWLTLAVST
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YRLTEVSK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA