| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is alaS
Identifier: 59711143
GI number: 59711143
Start: 578664
End: 581243
Strand: Direct
Name: alaS
Synonym: VF_0536
Alternate gene names: 59711143
Gene position: 578664-581243 (Clockwise)
Preceding gene: 59711142
Following gene: 59711144
Centisome position: 19.97
GC content: 40.54
Gene sequence:
>2580_bases ATGTATATGAGCACTGACGAGATCCGCCGTGCGTTCCTTGCTTTTTTTGAAAGCAAAGGACACCAAATTGTTGAGAGTTC TTCTCTAGTTCCAGCAAACGATCCAACTCTTCTATTTACTAACGCCGGTATGAACCAATTTAAAGATTGTTTCTTAGGTT CAGAGAAGCGTAACTATACTCGTGCAACAACAGCTCAACGCTGTGTTCGTGCTGGTGGTAAGCACAACGATTTAGAAAAT GTTGGTTTCACTGCTCGTCACCATACATTTTTTGAAATGTTGGGTAACTTCAGCTTTGGTGATTACTTTAAGCAAGATGC TATTAAATACGCATGGGAATTCTTAACAGAACGTCTAGAGCTACCAGCTGATCGCTTATTAGTTACTGTTTATGAAACAG ATGATGAAGCATTTGAAATCTGGAATAAAGAAATGGGTATTCCAGCTGATCGCATCGTACGTATTGGTGATAACAAAGGC GCACCATATGCTTCAGATAACTTCTGGCAAATGGGTGACACAGGTCCTTGTGGTCCTTGTACAGAAATCTTTTACGATCA CGGTGAGCACATTTGGGGTGGTCGTCCAGGTACACCAGAAGAAGATGGTGACCGTTTTATCGAGATCTGGAACAACGTAT TTATGCAGTTTAACCGTCATGCTGATGGCACGATGGAACCTTTACCAAAACCTTCTGTTGATACAGGTATGGGTATTGAG CGTATTGCTGCAATTATGCAAGGTGTTCACTCAAACTACGAAATCGATATTTTCCAAACACTAATTAAAGAAGCGGCAAA AGTAATTGGTTACGATGATTTATCAAACCAATCTTTACGTGTAGTAGCTGACCATATTCGTTCTTGTTCATACCTAATCG TTGATGGTGTTATGCCATCTAATGAAGGTCGTGGCTATGTGTTACGTCGTATTATTCGTCGTGCAGTACGTCATGGTAAC AAGTTAGGTGCTAAAGGTTCTTACTTCTACAAACTGGTTGGCCCATTAGCTGAAATCATGGGTACAGCTGGTGAAGAACT GAAAAAACAGCAAGCACTTGTTGAAAAAGTACTTAAGATTGAAGAAGAAAACTTTGGACGTACACTTGAGCGTGGTATGG CAATTCTAAATGAAGCGCTAGATAACCTTGAAGGTACAGTTCTTGATGGTGAAACTGTATTTAAATTGTATGACACATAC GGTTTCCCAGCTGATTTAACCAACGATGTTGCTCGTGAGCGTGAATTAACTATCGATGAAGATGGTTTTGAAAAAGCGAT GGAAGAACAACGTCAACGTGCACGTGAAGCGGGCCAATTTGGTACTGATTACAATGCAGTAATCAAAGTAGAATCTGAAA CTGTATTCCATGGTTATGATTCGACTGAAGCAAAAGCATCAGTAGTTGCATTATTCCGTGAAGGTGAAGAAGTTGATGCT TTATCAGCAGGTGATGATGCGATTCTAATTTTGGATCAAACACCTTTCTACGCTGAGTCAGGCGGTCAATGTGGTGATGC AGGTATTATCACAGTTGAAACGGGTAAGTTTGTTGTTACCGATACACATAAAATCGGTAATGCGATTGGTCACCATGGTA AATTAGTAGAAGGTGTTCTATCTAAAGCTGATCATGCGATGGCTCAAGTTGATGAGACTCGTCGCGCAGCGATTATCTTA AACCACTCAGCAACGCACTTATTACACGCAGCACTTCGTCAAGTGTTAGGTGAACACGTAACGCAAAAAGGTTCATTAGT TAAAGCTGAGAACCTACGTTTTGACTTCTCACACCTTGAAGCGGTTAAAGCTGAAGAATTGCGTCAGGTTGAACGTATTG TTAACCAACAAATTCGTTTAAATCACACAATTGAAACTGACCTAATGGATATCGATGCGGCGAAAGAAAAAGGCGCAATG GCTCTATTTGGTGAAAAATACGATGATGAAGTTCGAGTTCTTTCTATGGGAGAGTTCTCAACTGAACTATGTGGTGGTAT TCACGCATCAAGCACTGGTGATATTGGTCTATTTAAGATCACATCAGAAGGTGGTATTGCTGCAGGTATCCGTCGTATTG AAGCAGTTACAGGTGAAGCAGCATTAGATGCAATCGAAGCTCAACAAAAAGCGGCAGATAAAAAGCTAAATGAAGCAGCA TCAAAAGCAAAACAACTTGAAAAAGAAATTCAACAACTTAAAGATAAGTTAGCGTCTCAAGAAAGTGCTAGCCTTATCAA TAAAGTACAAGAAATTGCAGGAACAAAAGTACTTGTTGCTCAATTAGATGGTGCAGAAAATAAAGCACTTCGCGGTATGG TTGATGAACTTAAGAACCAAATCGGTAGCGGCATTATTATGTTAGGTAATGTTAGTGAAGGTAAAGTTGGTTTAATTGCT GGTGTAACAAAAGATCTTATTGGCCAAGTTAAAGCGGGTGAATTAGTGAATATGGTTGCACAGCAAGTTGGTGGTAAAGG CGGCGGTCGTCCAGATATGGCTCAAGCTGGCGGTACTGATGCTGAAGCATTACCAAATGCACTTGCTTCTGTTGAAGCTT GGCTAACTGAGCGTCTATAA
Upstream 100 bases:
>100_bases TCATTTGCGTATACAATGTGCGAAATTCTGTCTAAAAAACACTGCTTGTCCTAATGAGTACAAGAGTGAGTTAAACTACG ATTCAATCAGGAATATCCAC
Downstream 100 bases:
>100_bases TAGGTCGTATCAGTGGCATTAATCGTACAAAAGTATGGTGGTACATCAGTTGGATCCGTTGAACGGATCCAATCTGTTTC CGAACGTATCATATCAACAC
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MYMSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRATTAQRCVRAGGKHNDLEN VGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKG APYASDNFWQMGDTGPCGPCTEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE RIAAIMQGVHSNYEIDIFQTLIKEAAKVIGYDDLSNQSLRVVADHIRSCSYLIVDGVMPSNEGRGYVLRRIIRRAVRHGN KLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIEEENFGRTLERGMAILNEALDNLEGTVLDGETVFKLYDTY GFPADLTNDVARERELTIDEDGFEKAMEEQRQRAREAGQFGTDYNAVIKVESETVFHGYDSTEAKASVVALFREGEEVDA LSAGDDAILILDQTPFYAESGGQCGDAGIITVETGKFVVTDTHKIGNAIGHHGKLVEGVLSKADHAMAQVDETRRAAIIL NHSATHLLHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDLMDIDAAKEKGAM ALFGEKYDDEVRVLSMGEFSTELCGGIHASSTGDIGLFKITSEGGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAA SKAKQLEKEIQQLKDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIMLGNVSEGKVGLIA GVTKDLIGQVKAGELVNMVAQQVGGKGGGRPDMAQAGGTDAEALPNALASVEAWLTERL
Sequences:
>Translated_859_residues MYMSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRATTAQRCVRAGGKHNDLEN VGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKG APYASDNFWQMGDTGPCGPCTEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE RIAAIMQGVHSNYEIDIFQTLIKEAAKVIGYDDLSNQSLRVVADHIRSCSYLIVDGVMPSNEGRGYVLRRIIRRAVRHGN KLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIEEENFGRTLERGMAILNEALDNLEGTVLDGETVFKLYDTY GFPADLTNDVARERELTIDEDGFEKAMEEQRQRAREAGQFGTDYNAVIKVESETVFHGYDSTEAKASVVALFREGEEVDA LSAGDDAILILDQTPFYAESGGQCGDAGIITVETGKFVVTDTHKIGNAIGHHGKLVEGVLSKADHAMAQVDETRRAAIIL NHSATHLLHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDLMDIDAAKEKGAM ALFGEKYDDEVRVLSMGEFSTELCGGIHASSTGDIGLFKITSEGGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAA SKAKQLEKEIQQLKDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIMLGNVSEGKVGLIA GVTKDLIGQVKAGELVNMVAQQVGGKGGGRPDMAQAGGTDAEALPNALASVEAWLTERL >Mature_859_residues MYMSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRATTAQRCVRAGGKHNDLEN VGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKG APYASDNFWQMGDTGPCGPCTEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE RIAAIMQGVHSNYEIDIFQTLIKEAAKVIGYDDLSNQSLRVVADHIRSCSYLIVDGVMPSNEGRGYVLRRIIRRAVRHGN KLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIEEENFGRTLERGMAILNEALDNLEGTVLDGETVFKLYDTY GFPADLTNDVARERELTIDEDGFEKAMEEQRQRAREAGQFGTDYNAVIKVESETVFHGYDSTEAKASVVALFREGEEVDA LSAGDDAILILDQTPFYAESGGQCGDAGIITVETGKFVVTDTHKIGNAIGHHGKLVEGVLSKADHAMAQVDETRRAAIIL NHSATHLLHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDLMDIDAAKEKGAM ALFGEKYDDEVRVLSMGEFSTELCGGIHASSTGDIGLFKITSEGGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAA SKAKQLEKEIQQLKDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIMLGNVSEGKVGLIA GVTKDLIGQVKAGELVNMVAQQVGGKGGGRPDMAQAGGTDAEALPNALASVEAWLTERL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI109148542, Length=978, Percent_Identity=36.6053169734151, Blast_Score=533, Evalue=1e-151, Organism=Homo sapiens, GI38569417, Length=901, Percent_Identity=34.4062153163152, Blast_Score=446, Evalue=1e-125, Organism=Escherichia coli, GI1789048, Length=875, Percent_Identity=69.3714285714286, Blast_Score=1246, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=975, Percent_Identity=37.5384615384615, Blast_Score=543, Evalue=1e-154, Organism=Caenorhabditis elegans, GI17536681, Length=743, Percent_Identity=33.9165545087483, Blast_Score=398, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6324911, Length=957, Percent_Identity=39.1849529780564, Blast_Score=579, Evalue=1e-166, Organism=Drosophila melanogaster, GI24582809, Length=961, Percent_Identity=37.1488033298647, Blast_Score=560, Evalue=1e-159, Organism=Drosophila melanogaster, GI45552267, Length=961, Percent_Identity=37.1488033298647, Blast_Score=560, Evalue=1e-159, Organism=Drosophila melanogaster, GI24658214, Length=812, Percent_Identity=30.7881773399015, Blast_Score=335, Evalue=8e-92,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SYA_VIBF1 (Q5E7G5)
Other databases:
- EMBL: CP000020 - RefSeq: YP_203919.1 - ProteinModelPortal: Q5E7G5 - STRING: Q5E7G5 - GeneID: 3277324 - GenomeReviews: CP000020_GR - KEGG: vfi:VF_0536 - NMPDR: fig|312309.3.peg.536 - eggNOG: COG0013 - HOGENOM: HBG354397 - OMA: GESKTDQ - PhylomeDB: Q5E7G5 - ProtClustDB: PRK00252 - BioCyc: VFIS312309:VF0536-MONOMER - GO: GO:0005737 - HAMAP: MF_00036_B - InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 - PRINTS: PR00980 - SMART: SM00863 - TIGRFAMs: TIGR00344
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD; SSF101353 Ala-tRNA-synth_IIc_anticod-bd; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.7
Molecular weight: Translated: 94252; Mature: 94252
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYT CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCH RATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLE HHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LPADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPC CCCCCEEEEEEECCCHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCHH TEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE HHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH RIAAIMQGVHSNYEIDIFQTLIKEAAKVIGYDDLSNQSLRVVADHIRSCSYLIVDGVMPS HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH EEENFGRTLERGMAILNEALDNLEGTVLDGETVFKLYDTYGFPADLTNDVARERELTIDE HHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC DGFEKAMEEQRQRAREAGQFGTDYNAVIKVESETVFHGYDSTEAKASVVALFREGEEVDA HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHCCCCCCC LSAGDDAILILDQTPFYAESGGQCGDAGIITVETGKFVVTDTHKIGNAIGHHGKLVEGVL CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEECCHHHHHHHCCCHHHHHHHH SKADHAMAQVDETRRAAIILNHSATHLLHAALRQVLGEHVTQKGSLVKAENLRFDFSHLE HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECHHHHH AVKAEELRQVERIVNQQIRLNHTIETDLMDIDAAKEKGAMALFGEKYDDEVRVLSMGEFS HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCEEEECCCCCCCEEEEECCCHH TELCGGIHASSTGDIGLFKITSEGGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAA HHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKAKQLEKEIQQLKDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQ HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH IGSGIIMLGNVSEGKVGLIAGVTKDLIGQVKAGELVNMVAQQVGGKGGGRPDMAQAGGTD HCCCEEEEECCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCC AEALPNALASVEAWLTERL HHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYMSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYT CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCH RATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLE HHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LPADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPC CCCCCEEEEEEECCCHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCHH TEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE HHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH RIAAIMQGVHSNYEIDIFQTLIKEAAKVIGYDDLSNQSLRVVADHIRSCSYLIVDGVMPS HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH EEENFGRTLERGMAILNEALDNLEGTVLDGETVFKLYDTYGFPADLTNDVARERELTIDE HHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC DGFEKAMEEQRQRAREAGQFGTDYNAVIKVESETVFHGYDSTEAKASVVALFREGEEVDA HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHCCCCCCC LSAGDDAILILDQTPFYAESGGQCGDAGIITVETGKFVVTDTHKIGNAIGHHGKLVEGVL CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEECCHHHHHHHCCCHHHHHHHH SKADHAMAQVDETRRAAIILNHSATHLLHAALRQVLGEHVTQKGSLVKAENLRFDFSHLE HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECHHHHH AVKAEELRQVERIVNQQIRLNHTIETDLMDIDAAKEKGAMALFGEKYDDEVRVLSMGEFS HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCEEEECCCCCCCEEEEECCCHH TELCGGIHASSTGDIGLFKITSEGGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAA HHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKAKQLEKEIQQLKDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQ HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH IGSGIIMLGNVSEGKVGLIAGVTKDLIGQVKAGELVNMVAQQVGGKGGGRPDMAQAGGTD HCCCEEEEECCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCC AEALPNALASVEAWLTERL HHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA