Click here to switch to the map view.

The map label for this gene is mshC

Identifier: 59710974

GI number: 59710974

Start: 399006

End: 399602

Strand: Direct

Name: mshC

Synonym: VF_0367

Alternate gene names: NA

Gene position: 399006-399602 (Clockwise)

Preceding gene: 59710973

Following gene: 59710975

Centisome position: 13.77

GC content: 39.2

Gene sequence:

>597_bases
ATGATGACTTTTCCTCTCAAAAAAAATCAAATAAAACAACGACAAAATAGGAATGGCTTTACTTTGGTTGAGCTCATCGT
TGTGATCCTGCTACTTGCTATTATTGCTGTTTACACCGCCAGTAAATACATGGGAGCAAGCCGTTTTTCATCGGCTGCAG
CTCAAGAGCAAGTTTTGTCTATTTTGCGTCATGTTCAAATTGCATCAATGCAAACTAACACCTCTCATATTAATAATGCG
TGTCGTTCGGTTCTTACATCATCGAATCAATTTGGTGTGGATTCTGCGTGCCAAAACCAAGGTATGGCGAGTGCGGTATT
ATCAGATTACTCCAAAGAAAATGATCGTGAAAATCTGGATATGATCCGGTTAAGTTATGCCTTTAATACGGCAAGTGGTG
CCGTAGCAATTTCAGCTCTTTCGTTTGATTTATTGGGGAGACCAATAATTCCGGTATCACCAAATTTGATTCTCTGCACC
CAAGAAGATTGCCGCATCACGATTACAACCCCTGCAACAAATGAAAGTCGTTCTGTCTGTATCAATAACGAAGGCTTTAT
GTATCGTTCTTTGCAAAATATGAGTTGTAAAATATGA

Upstream 100 bases:

>100_bases
CCAGCGATCTCCGCTGGTTTTTTTGTATCTAAAAATAACAAACCATTCGCTATATCTATAATTTCCGTTATCCTAGTAAC
AGGAGATTATAAGGTAACGG

Downstream 100 bases:

>100_bases
AAGGAAGCCTGAATACACAACGAGGTTTAACCTTGATTGAGTCGATCGTAGGTATTGTGATCTTAGGGTTTGCATTATCG
GTATTGGTATCTGGTGTGTT

Product: MSHA pilin protein MshC

Products: NA

Alternate protein names: Type IV Pilus Prepilin-Like Protein

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MMTFPLKKNQIKQRQNRNGFTLVELIVVILLLAIIAVYTASKYMGASRFSSAAAQEQVLSILRHVQIASMQTNTSHINNA
CRSVLTSSNQFGVDSACQNQGMASAVLSDYSKENDRENLDMIRLSYAFNTASGAVAISALSFDLLGRPIIPVSPNLILCT
QEDCRITITTPATNESRSVCINNEGFMYRSLQNMSCKI

Sequences:

>Translated_198_residues
MMTFPLKKNQIKQRQNRNGFTLVELIVVILLLAIIAVYTASKYMGASRFSSAAAQEQVLSILRHVQIASMQTNTSHINNA
CRSVLTSSNQFGVDSACQNQGMASAVLSDYSKENDRENLDMIRLSYAFNTASGAVAISALSFDLLGRPIIPVSPNLILCT
QEDCRITITTPATNESRSVCINNEGFMYRSLQNMSCKI
>Mature_198_residues
MMTFPLKKNQIKQRQNRNGFTLVELIVVILLLAIIAVYTASKYMGASRFSSAAAQEQVLSILRHVQIASMQTNTSHINNA
CRSVLTSSNQFGVDSACQNQGMASAVLSDYSKENDRENLDMIRLSYAFNTASGAVAISALSFDLLGRPIIPVSPNLILCT
QEDCRITITTPATNESRSVCINNEGFMYRSLQNMSCKI

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21782; Mature: 21782

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTFPLKKNQIKQRQNRNGFTLVELIVVILLLAIIAVYTASKYMGASRFSSAAAQEQVLS
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ILRHVQIASMQTNTSHINNACRSVLTSSNQFGVDSACQNQGMASAVLSDYSKENDRENLD
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCHH
MIRLSYAFNTASGAVAISALSFDLLGRPIIPVSPNLILCTQEDCRITITTPATNESRSVC
EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEE
INNEGFMYRSLQNMSCKI
ECCCCEEEECCCCCCCCC
>Mature Secondary Structure
MMTFPLKKNQIKQRQNRNGFTLVELIVVILLLAIIAVYTASKYMGASRFSSAAAQEQVLS
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
ILRHVQIASMQTNTSHINNACRSVLTSSNQFGVDSACQNQGMASAVLSDYSKENDRENLD
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCHH
MIRLSYAFNTASGAVAISALSFDLLGRPIIPVSPNLILCTQEDCRITITTPATNESRSVC
EEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEE
INNEGFMYRSLQNMSCKI
ECCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA