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The map label for this gene is mshD

Identifier: 59710975

GI number: 59710975

Start: 399599

End: 400180

Strand: Direct

Name: mshD

Synonym: VF_0368

Alternate gene names: NA

Gene position: 399599-400180 (Clockwise)

Preceding gene: 59710974

Following gene: 59710976

Centisome position: 13.79

GC content: 39.52

Gene sequence:

>582_bases
ATGAAAGGAAGCCTGAATACACAACGAGGTTTAACCTTGATTGAGTCGATCGTAGGTATTGTGATCTTAGGGTTTGCATT
ATCGGTATTGGTATCTGGTGTGTTTACTTCTTCTTCCACTTCTCATAAAGCGACTTATCAAGCACAAGCTGCCACGCTTG
GCCACTCTGTAGTGACGGATATTTTAAGTCGTCAGTTTGATGAAAATAGCGATCCTAATGGTGGAAAATATCGATGTGGT
GAAAAGAATGGCAGTGGAATACGCATTAGTTGCTCTATGAATTTAGGTAAAGATGGGATTGAAACCATCGCAGCCACATT
CAATGATGTTGATGACTTCATTGGTTGCTGGGGAGAGGTTTCTGTATGTTCTTCAACTAGCTTGCCGCAATACCAATTAG
GTGATCTTATTGGTGTCTCTAATGCCGATGAGTATAAAAGTTTTACGGTTGAAATAACGGTTAACTATAACGATGTTGAT
AATTCAGGTACGGTAATAACACCGTATAAGCTTATTAGAGTAACCCTCTATGGAAGTAACCATGCCAAGTACACTTTTAG
TGCGTATCGAGGTAATTACTAA

Upstream 100 bases:

>100_bases
GCATCACGATTACAACCCCTGCAACAAATGAAAGTCGTTCTGTCTGTATCAATAACGAAGGCTTTATGTATCGTTCTTTG
CAAAATATGAGTTGTAAAAT

Downstream 100 bases:

>100_bases
TGAAACGTGCATTAGGGTTTACGTTAATTGAGCTTATTTTAACCATTGTCGTTGTTGGGCTTGTAGCCTTGGCGGCGAGT
AATACATTACAACTTGGCTT

Product: MshD protein

Products: NA

Alternate protein names: Methylation Site Containing Protein; MshD Protein; Msha Pilin Protein Mshd; Mannose-Sensitive Agglutinin; Fused MSHA Biogenesis Proteins MshN And MshD; Prepilin-Type Cleavage/Methylation-Like; Pilin Protein; Type IV Pilus Prepilin-Like Protein

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKGSLNTQRGLTLIESIVGIVILGFALSVLVSGVFTSSSTSHKATYQAQAATLGHSVVTDILSRQFDENSDPNGGKYRCG
EKNGSGIRISCSMNLGKDGIETIAATFNDVDDFIGCWGEVSVCSSTSLPQYQLGDLIGVSNADEYKSFTVEITVNYNDVD
NSGTVITPYKLIRVTLYGSNHAKYTFSAYRGNY

Sequences:

>Translated_193_residues
MKGSLNTQRGLTLIESIVGIVILGFALSVLVSGVFTSSSTSHKATYQAQAATLGHSVVTDILSRQFDENSDPNGGKYRCG
EKNGSGIRISCSMNLGKDGIETIAATFNDVDDFIGCWGEVSVCSSTSLPQYQLGDLIGVSNADEYKSFTVEITVNYNDVD
NSGTVITPYKLIRVTLYGSNHAKYTFSAYRGNY
>Mature_193_residues
MKGSLNTQRGLTLIESIVGIVILGFALSVLVSGVFTSSSTSHKATYQAQAATLGHSVVTDILSRQFDENSDPNGGKYRCG
EKNGSGIRISCSMNLGKDGIETIAATFNDVDDFIGCWGEVSVCSSTSLPQYQLGDLIGVSNADEYKSFTVEITVNYNDVD
NSGTVITPYKLIRVTLYGSNHAKYTFSAYRGNY

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20741; Mature: 20741

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSLNTQRGLTLIESIVGIVILGFALSVLVSGVFTSSSTSHKATYQAQAATLGHSVVTD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
ILSRQFDENSDPNGGKYRCGEKNGSGIRISCSMNLGKDGIETIAATFNDVDDFIGCWGEV
HHHHHCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCE
SVCSSTSLPQYQLGDLIGVSNADEYKSFTVEITVNYNDVDNSGTVITPYKLIRVTLYGSN
EECCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEEECCCCCCCCEECCEEEEEEEEECCC
HAKYTFSAYRGNY
CCEEEEEECCCCC
>Mature Secondary Structure
MKGSLNTQRGLTLIESIVGIVILGFALSVLVSGVFTSSSTSHKATYQAQAATLGHSVVTD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
ILSRQFDENSDPNGGKYRCGEKNGSGIRISCSMNLGKDGIETIAATFNDVDDFIGCWGEV
HHHHHCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCE
SVCSSTSLPQYQLGDLIGVSNADEYKSFTVEITVNYNDVDNSGTVITPYKLIRVTLYGSN
EECCCCCCCCCCCCCEECCCCCCCCEEEEEEEEEEECCCCCCCCEECCEEEEEEEEECCC
HAKYTFSAYRGNY
CCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA