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The map label for this gene is rarD [C]

Identifier: 59710676

GI number: 59710676

Start: 80164

End: 81279

Strand: Reverse

Name: rarD [C]

Synonym: VF_0069

Alternate gene names: 59710676

Gene position: 81279-80164 (Counterclockwise)

Preceding gene: 59710679

Following gene: 59710673

Centisome position: 2.81

GC content: 38.44

Gene sequence:

>1116_bases
ATGGGAGGCTCATTCTACCCATGCTTATCGGTGAGTAAAAGAGCAATAGGAAAAAACACGGCATATTCGACACTGTATTA
TCTTCAATACACGATTAAAAAAGCATCTTTTTCTAACGTCATATATACTAGCGAAAATAATAATATCTTTAGAGTGTCAC
TCCTGACATTCTCTTTTTTCTATTTTACTCGCACTGTTAAGAACTCACATATGCCAACAACGACTCTCGAACAACAACGC
ACTCGTCAGGGTGTCTTATTTGCTCTTGGTGCTTACACCATATGGGGCATTGCACCAATTTATTTTAAAACCATCAGCGA
AGTCTCTCCTTTAGAGATTTTAAGTCACCGTGTTATTTGGTCTTTTTTCTTTTTGGCGGCATTACTCTCTTTTTCCAAAG
GCTGGGCAACGGTTATCAATACACTAAAAGATAAGAAAAAAATGACTTATCTAATTACAACCAGTGTATTAATTGGTGCT
AATTGGCTGATATTTATCTGGGCTGTAAATGCCGGACATATGCTGGACGCGAGCTTAGGTTATTACATTAATCCGCTGCT
CAACGTTGTTCTCGGAATGATTTTTCTTGGGGAGCGATTAAGACGGCTTCAATGGGTCGCGGTTCTATTTGCAAGTGCTG
GAGTGCTAATCCAACTAATAACCTTTGGCTCAATTCCAGTTGTCGCCATTGCGCTTGCGTGTAGTTTTGGATTTTATGGA
TTACTTCGTAAAAAAGTCGCAATGGATGCACAAACCGGATTATTTATAGAAACCTTAGTGATGTTACCACTTACCCTAAT
TTATCTATTGTTTATTGCTGATTCTGCGACATCAAATTTTAGTGAAAATACGCTGAACTTAAATCTGTTGCTGATCGCTG
CCGGTATCATCACAACTGTCCCATTACTCTGTTTTACTGGAGCAGCTACTCGGCTAAAACTGTCTACACTAGGCTTTTTC
CAATATATAGGCCCAAGCTTAATGTTCTTGCTAGCGGTCGGATTATATGGGGAAGAATTTAGTGCTGATAAAGCAATTAC
TTTTGGGTTTATTTGGGGTGCATTAGTTATCTTTACCACAGATGCTTTCATGGCTAGAAACAAAAAGAATAAATAA

Upstream 100 bases:

>100_bases
CTTGGTAGCCAAACACGTCTTTTAAAACCGTGTAACTTGGCGACACCTCTTCCATTGGTTGCTCTGCGATCATGCTGGAC
ATAAAAAACTCATCAATAAT

Downstream 100 bases:

>100_bases
CACTAAACAGCTAGGTATAATTTTGTAACATTAAAATGTATACCTAATTTTTATATTTAGATCTACGCCTATTTATTGCA
CTTTTTTATACTTAATTAGC

Product: chloramphenical resistance permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MGGSFYPCLSVSKRAIGKNTAYSTLYYLQYTIKKASFSNVIYTSENNNIFRVSLLTFSFFYFTRTVKNSHMPTTTLEQQR
TRQGVLFALGAYTIWGIAPIYFKTISEVSPLEILSHRVIWSFFFLAALLSFSKGWATVINTLKDKKKMTYLITTSVLIGA
NWLIFIWAVNAGHMLDASLGYYINPLLNVVLGMIFLGERLRRLQWVAVLFASAGVLIQLITFGSIPVVAIALACSFGFYG
LLRKKVAMDAQTGLFIETLVMLPLTLIYLLFIADSATSNFSENTLNLNLLLIAAGIITTVPLLCFTGAATRLKLSTLGFF
QYIGPSLMFLLAVGLYGEEFSADKAITFGFIWGALVIFTTDAFMARNKKNK

Sequences:

>Translated_371_residues
MGGSFYPCLSVSKRAIGKNTAYSTLYYLQYTIKKASFSNVIYTSENNNIFRVSLLTFSFFYFTRTVKNSHMPTTTLEQQR
TRQGVLFALGAYTIWGIAPIYFKTISEVSPLEILSHRVIWSFFFLAALLSFSKGWATVINTLKDKKKMTYLITTSVLIGA
NWLIFIWAVNAGHMLDASLGYYINPLLNVVLGMIFLGERLRRLQWVAVLFASAGVLIQLITFGSIPVVAIALACSFGFYG
LLRKKVAMDAQTGLFIETLVMLPLTLIYLLFIADSATSNFSENTLNLNLLLIAAGIITTVPLLCFTGAATRLKLSTLGFF
QYIGPSLMFLLAVGLYGEEFSADKAITFGFIWGALVIFTTDAFMARNKKNK
>Mature_370_residues
GGSFYPCLSVSKRAIGKNTAYSTLYYLQYTIKKASFSNVIYTSENNNIFRVSLLTFSFFYFTRTVKNSHMPTTTLEQQRT
RQGVLFALGAYTIWGIAPIYFKTISEVSPLEILSHRVIWSFFFLAALLSFSKGWATVINTLKDKKKMTYLITTSVLIGAN
WLIFIWAVNAGHMLDASLGYYINPLLNVVLGMIFLGERLRRLQWVAVLFASAGVLIQLITFGSIPVVAIALACSFGFYGL
LRKKVAMDAQTGLFIETLVMLPLTLIYLLFIADSATSNFSENTLNLNLLLIAAGIITTVPLLCFTGAATRLKLSTLGFFQ
YIGPSLMFLLAVGLYGEEFSADKAITFGFIWGALVIFTTDAFMARNKKNK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=62.1621621621622, Blast_Score=384, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 41314; Mature: 41183

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGSFYPCLSVSKRAIGKNTAYSTLYYLQYTIKKASFSNVIYTSENNNIFRVSLLTFSFF
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHH
YFTRTVKNSHMPTTTLEQQRTRQGVLFALGAYTIWGIAPIYFKTISEVSPLEILSHRVIW
HHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SFFFLAALLSFSKGWATVINTLKDKKKMTYLITTSVLIGANWLIFIWAVNAGHMLDASLG
HHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEHHHHHCCCEEEEEEEECCCCEECCCCH
YYINPLLNVVLGMIFLGERLRRLQWVAVLFASAGVLIQLITFGSIPVVAIALACSFGFYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LLRKKVAMDAQTGLFIETLVMLPLTLIYLLFIADSATSNFSENTLNLNLLLIAAGIITTV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHH
PLLCFTGAATRLKLSTLGFFQYIGPSLMFLLAVGLYGEEFSADKAITFGFIWGALVIFTT
HHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
DAFMARNKKNK
HHHHHCCCCCC
>Mature Secondary Structure 
GGSFYPCLSVSKRAIGKNTAYSTLYYLQYTIKKASFSNVIYTSENNNIFRVSLLTFSFF
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHHH
YFTRTVKNSHMPTTTLEQQRTRQGVLFALGAYTIWGIAPIYFKTISEVSPLEILSHRVIW
HHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SFFFLAALLSFSKGWATVINTLKDKKKMTYLITTSVLIGANWLIFIWAVNAGHMLDASLG
HHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEHHHHHCCCEEEEEEEECCCCEECCCCH
YYINPLLNVVLGMIFLGERLRRLQWVAVLFASAGVLIQLITFGSIPVVAIALACSFGFYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LLRKKVAMDAQTGLFIETLVMLPLTLIYLLFIADSATSNFSENTLNLNLLLIAAGIITTV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHH
PLLCFTGAATRLKLSTLGFFQYIGPSLMFLLAVGLYGEEFSADKAITFGFIWGALVIFTT
HHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
DAFMARNKKNK
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]