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The map label for this gene is cycM [H]

Identifier: 58617424

GI number: 58617424

Start: 1105280

End: 1105804

Strand: Reverse

Name: cycM [H]

Synonym: ERGA_CDS_06970

Alternate gene names: 58617424

Gene position: 1105804-1105280 (Counterclockwise)

Preceding gene: 58617425

Following gene: 58617423

Centisome position: 73.72

GC content: 34.86

Gene sequence:

>525_bases
ATGGATGGTTTTCAATTAAATAAAATATTTACAGCTATTTTGTTTGCATGTTTTATAGTATTGTTTGTTAGTAATGTAAC
TGACTTATTGTATAATCCTGAGCCTCATGCTGAACCAGTAAGGGGTTATAAAGTAGATGTAGAGCAACAGGGTCTGATAG
AAGAAAGTGCAGCTGTTCCTGATGTACAAGTAGATATCCAGGCTCTTGTAGCACAAGCTAATATAACAAAGGGAAAAGAG
ATTTCAAAAAAGTGTGTGTCATGTCATACTTTTGAGAAAGGTGGAGCAAATAAAGTTGGTCCAAACCTATGGCATATAAT
AGGGAACAAAAAAGCACATTTAGGGGATGCTTTCAATTATTCAAAGGCAATGTTGAATATTGGTGGAACATGGGAGTATC
ATGACTTGTTTCAGTTTTTAACAAAGCCTCAGGCTTATGTTAAAGGTACACGTATGGCATTTGCTGGGATTTCAAAGCCT
CAAGATATAGCAGATTTAATAGCATATATGAAGTCTTTAGAATAG

Upstream 100 bases:

>100_bases
ATAATCAAAACCTATGTTATTTGTTGACTATAGTTAACTATTATATTACCCTAGGAAAGTACGATTATAGTTACTTGTAA
GCTAGGGACTCCAAAGTAAT

Downstream 100 bases:

>100_bases
GTTTGTCATTATGGAGGATACATATGTTGAATCAAGGTAGGCTAAAGTTATCTTATGCGCCGGATTTACATATATCATAT
AAGCAATTAATTAGTGATAG

Product: cytochrome c-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MDGFQLNKIFTAILFACFIVLFVSNVTDLLYNPEPHAEPVRGYKVDVEQQGLIEESAAVPDVQVDIQALVAQANITKGKE
ISKKCVSCHTFEKGGANKVGPNLWHIIGNKKAHLGDAFNYSKAMLNIGGTWEYHDLFQFLTKPQAYVKGTRMAFAGISKP
QDIADLIAYMKSLE

Sequences:

>Translated_174_residues
MDGFQLNKIFTAILFACFIVLFVSNVTDLLYNPEPHAEPVRGYKVDVEQQGLIEESAAVPDVQVDIQALVAQANITKGKE
ISKKCVSCHTFEKGGANKVGPNLWHIIGNKKAHLGDAFNYSKAMLNIGGTWEYHDLFQFLTKPQAYVKGTRMAFAGISKP
QDIADLIAYMKSLE
>Mature_174_residues
MDGFQLNKIFTAILFACFIVLFVSNVTDLLYNPEPHAEPVRGYKVDVEQQGLIEESAAVPDVQVDIQALVAQANITKGKE
ISKKCVSCHTFEKGGANKVGPNLWHIIGNKKAHLGDAFNYSKAMLNIGGTWEYHDLFQFLTKPQAYVKGTRMAFAGISKP
QDIADLIAYMKSLE

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=101, Percent_Identity=42.5742574257426, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=103, Percent_Identity=36.8932038834951, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17566554, Length=103, Percent_Identity=35.9223300970874, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320796, Length=87, Percent_Identity=43.6781609195402, Blast_Score=85, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6322508, Length=90, Percent_Identity=45.5555555555556, Blast_Score=83, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17137228, Length=104, Percent_Identity=44.2307692307692, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=40.3846153846154, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19265; Mature: 19265

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGFQLNKIFTAILFACFIVLFVSNVTDLLYNPEPHAEPVRGYKVDVEQQGLIEESAAVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHCCCHHHHCCCC
DVQVDIQALVAQANITKGKEISKKCVSCHTFEKGGANKVGPNLWHIIGNKKAHLGDAFNY
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
SKAMLNIGGTWEYHDLFQFLTKPQAYVKGTRMAFAGISKPQDIADLIAYMKSLE
HHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDGFQLNKIFTAILFACFIVLFVSNVTDLLYNPEPHAEPVRGYKVDVEQQGLIEESAAVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHCCCHHHHCCCC
DVQVDIQALVAQANITKGKEISKKCVSCHTFEKGGANKVGPNLWHIIGNKKAHLGDAFNY
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
SKAMLNIGGTWEYHDLFQFLTKPQAYVKGTRMAFAGISKPQDIADLIAYMKSLE
HHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]