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The map label for this gene is csrA [H]

Identifier: 57237985

GI number: 57237985

Start: 1164458

End: 1164685

Strand: Direct

Name: csrA [H]

Synonym: CJE1246

Alternate gene names: 57237985

Gene position: 1164458-1164685 (Clockwise)

Preceding gene: 57237984

Following gene: 57237986

Centisome position: 65.5

GC content: 28.95

Gene sequence:

>228_bases
ATGTTAATATTATCAAGAAAAGAAAATGAAAGTATAATTATCGGAGAAGGTATAGAAATCAAAGTCGTTCAAACAGGGAA
AGGATATGCCAAAATAGGTATAGAAGCTCCAAAATCCCTTATGATACTTAGAAAAGAACTTGTTCAACAAGTAAAGGATG
AAAATTTGCATTCTGTTGTTCAGAATGATATTAAACTTGATGACTTAAGCAAAAAACTAATCAAATGA

Upstream 100 bases:

>100_bases
TTCATGATGAAGGAGATTATTATATTGAAACAGAAAAATATTTTAGCATAATTAATATTAAAGAAAATACAGTAAAATAT
CTTCTAAATAAGGTTGAAAA

Downstream 100 bases:

>100_bases
AAGCTTACGCTAAAGCAAATATTTTTTTAAAACTTACCGGTTTTGACTCAAGAAAATATCATCTTTTAGAATCACGATTT
ATACTTTTAAAAGATGTTTT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILRKELVQQVKDENLHSVVQNDIKLDDLSKKLIK

Sequences:

>Translated_75_residues
MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILRKELVQQVKDENLHSVVQNDIKLDDLSKKLIK
>Mature_75_residues
MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILRKELVQQVKDENLHSVVQNDIKLDDLSKKLIK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 8441; Mature: 8441

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILRKELVQQVKDENLHSVV
CEEECCCCCCEEEEECCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH
QNDIKLDDLSKKLIK
HCCCCHHHHHHHHCC
>Mature Secondary Structure
MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILRKELVQQVKDENLHSVV
CEEECCCCCCEEEEECCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH
QNDIKLDDLSKKLIK
HCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500908 [H]