Click here to switch to the map view.

The map label for this gene is ycgF [H]

Identifier: 57237935

GI number: 57237935

Start: 1109915

End: 1110514

Strand: Reverse

Name: ycgF [H]

Synonym: CJE1193

Alternate gene names: 57237935

Gene position: 1110514-1109915 (Counterclockwise)

Preceding gene: 57237936

Following gene: 57237934

Centisome position: 62.46

GC content: 28.83

Gene sequence:

>600_bases
ATGTTTGATTCTTTTTTAAGTGGAGTTTTTTTGGGCTTTGGAGTGAGTGTTCCTTTTGGACCTGTAAATATTTTGATTTT
AACTTATGCACTAAAAGCTTTTAAAAATTCCATAGCTGTAGGACTTGGAGCATTTAGTATAGATATGCTTTATCTTTTTT
TGCTTCAATTTGGGCTTTTAAATTTCTTAGACAATGTCATTTTTATGCGTTTTTTGGCGATTTTTGGTTTTTGTTTTTTA
ACTTATATGGCGTATTTGATGCTAAGAAAAAAGAAAGAAAGCTTAAATTTAGAGCATAAAGAATTTAAAGAAAGTCTTTT
GAAAAGTTATATTAAAGGAGCTTTTTTAAATGGTTCAAATCCTTTTGTGATAGGATTTTGGCTTAGTGCTACAAGTGTGG
TTTTAAGCAGCGATCATGCTTATTTGATGACTTTAGGGCTTGTTGTGGCTATACTTTTTTGGGTAAGTGCTTTAGCCTTT
GTGGTGGCAAGATATAGTCATGTTTTTAGTGCAAAAGTTGTTTTTATAATCAATATAATTTCAGCTATAATTATAGAGTA
TTTTGCTCTTAATTTATTATATAAAACTTTTATAGGATAA

Upstream 100 bases:

>100_bases
GCGAATTTAGAGCGGTATTTTGATAAAATCTATATAGAAGATATTATAAACGCTATTGATAAAATCGCACTTGATATAGA
AAATTTTATGAAAGATGGTA

Downstream 100 bases:

>100_bases
AAAAATGAATGCAAAAGAATTTTTAATCGAACTTTTAAAATTTAAATCTGTTACGCCAAATGATGATGGAGCTTTAAATT
TCATCGCTATGGAACTGAGT

Product: amino acid transporter LysE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGAFSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFL
TYMAYLMLRKKKESLNLEHKEFKESLLKSYIKGAFLNGSNPFVIGFWLSATSVVLSSDHAYLMTLGLVVAILFWVSALAF
VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG

Sequences:

>Translated_199_residues
MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGAFSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFL
TYMAYLMLRKKKESLNLEHKEFKESLLKSYIKGAFLNGSNPFVIGFWLSATSVVLSSDHAYLMTLGLVVAILFWVSALAF
VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG
>Mature_199_residues
MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGAFSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFL
TYMAYLMLRKKKESLNLEHKEFKESLLKSYIKGAFLNGSNPFVIGFWLSATSVVLSSDHAYLMTLGLVVAILFWVSALAF
VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 22366; Mature: 22366

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGAFSIDMLYLFLLQFGLL
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEFKESLLKSYIKGAFLNGSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
PFVIGFWLSATSVVLSSDHAYLMTLGLVVAILFWVSALAFVVARYSHVFSAKVVFIINII
CEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAIIIEYFALNLLYKTFIG
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGAFSIDMLYLFLLQFGLL
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEFKESLLKSYIKGAFLNGSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
PFVIGFWLSATSVVLSSDHAYLMTLGLVVAILFWVSALAFVVARYSHVFSAKVVFIINII
CEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAIIIEYFALNLLYKTFIG
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]