Click here to switch to the map view.

The map label for this gene is ylbH [H]

Identifier: 57235055

GI number: 57235055

Start: 184012

End: 184590

Strand: Direct

Name: ylbH [H]

Synonym: DET0189

Alternate gene names: 57235055

Gene position: 184012-184590 (Clockwise)

Preceding gene: 57235066

Following gene: 57235054

Centisome position: 12.52

GC content: 50.09

Gene sequence:

>579_bases
ATGAGAATTATTGCCGGAGATGCCAAAGGCAAAAACATAATTGTACCCCAGCGTAAAGCTACCCGCCCGGCTACCGAACT
GGTCAGGGGGGCTATGATGTCCATGCTGGAGGCAATAGCCGAAGACTGGAGCGAGGTGCTGGATATTTATTCCGGCAGCG
GCTCTTTAGGTTTGGAAGCCCTTTCCCGCGGGGCCGGTCATGTAGATTTTGTTGAACATGAACGCGCTTGTTGTGATATA
ATAAAACAAAATTTGGAAACCATTGGCTGTGCAGGCCAGGCTCACGTTTATTGTTTGGATGTACCCAAGGCTATGTCCTT
GCTAGGCAAGCAATATGACGTAATACTGGCAGACCCTCCGTACCGCAACCAGCAGATTGGCGAGGTACTGGAAAAGCTGG
GGAATTCCAGCCTTATAGGTGAAAACACAGTTATGGCGGTTACCCATTCCGCCCATCTGACCCTGGCGGAGCGTTACGGG
CGGCTTACGATGTTAAAAGAACATCGTCACGGTGATAGCCTGATTGCTATATATAGAAAGGACAGCCGTTTTGATAGCCA
TTTACCCGGGCCGGTTTGA

Upstream 100 bases:

>100_bases
AGATTCTGAACCGTATTTTTGCAGCCGGGTATTATGGTAAAACTGGTTTCGGCTATGTTTAAACTTGATTTGGAGTCTGC
ATTCCGCTATTTTTTAAGGT

Downstream 100 bases:

>100_bases
CCCGGTAACCCTAGGCCATCTCAGCGTCGCCAGACGCGCTTCTGGCTTTTGTGACCGGCTGATTATTGCTGTCTTTGATA
ATCCTGCCAAACCGGGTCTT

Product: methyltransferase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEVLDIYSGSGSLGLEALSRGAGHVDFVEHERACCDI
IKQNLETIGCAGQAHVYCLDVPKAMSLLGKQYDVILADPPYRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYG
RLTMLKEHRHGDSLIAIYRKDSRFDSHLPGPV

Sequences:

>Translated_192_residues
MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEVLDIYSGSGSLGLEALSRGAGHVDFVEHERACCDI
IKQNLETIGCAGQAHVYCLDVPKAMSLLGKQYDVILADPPYRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYG
RLTMLKEHRHGDSLIAIYRKDSRFDSHLPGPV
>Mature_192_residues
MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEVLDIYSGSGSLGLEALSRGAGHVDFVEHERACCDI
IKQNLETIGCAGQAHVYCLDVPKAMSLLGKQYDVILADPPYRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYG
RLTMLKEHRHGDSLIAIYRKDSRFDSHLPGPV

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=186, Percent_Identity=27.4193548387097, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 21023; Mature: 21023

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEVLDIYSGSGSLGLEA
CEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LSRGAGHVDFVEHERACCDIIKQNLETIGCAGQAHVYCLDVPKAMSLLGKQYDVILADPP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHCCCCEEEECCCC
YRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYGRLTMLKEHRHGDSLIAIYRK
CCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCHHHHHHCCCCCCEEEEEEC
DSRFDSHLPGPV
CCCCCCCCCCCC
>Mature Secondary Structure
MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAEDWSEVLDIYSGSGSLGLEA
CEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LSRGAGHVDFVEHERACCDIIKQNLETIGCAGQAHVYCLDVPKAMSLLGKQYDVILADPP
HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHCCCCEEEECCCC
YRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYGRLTMLKEHRHGDSLIAIYRK
CCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCHHHHHHCCCCCCEEEEEEC
DSRFDSHLPGPV
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]