Click here to switch to the map view.

The map label for this gene is amyD [H]

Identifier: 56965259

GI number: 56965259

Start: 3633729

End: 3634418

Strand: Direct

Name: amyD [H]

Synonym: ABC3497

Alternate gene names: 56965259

Gene position: 3633729-3634418 (Clockwise)

Preceding gene: 56965258

Following gene: 56965260

Centisome position: 84.43

GC content: 45.36

Gene sequence:

>690_bases
ATGCGTGCTTGGAGCGCGTATGGGTTTACATTCCAATTTGCGATTGTTTCAACGATCCTGGTCAATATTCTTAGCCTGGC
AATTGCCTTGGGCTTACATGCAAAAATCAAATGTAAACAAACATTGCGCGCCATCTATTTCATGCCTAACATTCTAAGCG
TTTTAATCGTCGGATTCATTTTTCAATTTATATTTACACTATTTTTGCCTCAATTGGCAGACATGCTTGGCATAAGCACG
CTGTCTACTAACATTCTTGGCAGCCCTGATTACGCATGGATTGGCATCGTCGTGATGGCCGTTTGGCAAGCAACTGCGTT
TAATACGATTCTTTACTTAGCAGGGTTGCAGACGGTTCCAGAAGATGTATATGAAGCGGCTGCAATTGATGGCGCCAAAG
CATGGCGTCGCTTTTGGAGCATTACCTTTCCGATCATTGCTCCTTTTTTTACGATTAATATGGTGCTTGCACTCAAAAAC
TTTCTCATGGTATTTGACCATATTATCGCCTTAACAGGCGGCGGCCCTGGCTATGCAACCGAATCGATTTCGGTGCTCAT
CTACCGCGGCGGCTTCCAAGGGGGCCAGTTTGGCTACCAATCGGCCAACGCTGTGATTTATTTCATTATCATTGTCGCTT
TGTCTCTCTTCCAGCTCCGGATCTTGCAGAAACGGGAGGTGCAGCAGTAA

Upstream 100 bases:

>100_bases
TCCGCTTTTGCAAGGCGTGTTTTACAGTTTTACCAATTAGAAAGGCTATGGCGATTGGGACTTTGTCGGCCTGTCCAATT
ATATAAATGTCTTTAACGAT

Downstream 100 bases:

>100_bases
TGAAAAAAAACAAAACAAACTGGCTTGTAACAGGGCTGCTTTTGCTCGGTTCACTGTTTATTCTCTTGCCGCTTTACTTA
ACGATCAACATTGCTTTAAA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MRAWSAYGFTFQFAIVSTILVNILSLAIALGLHAKIKCKQTLRAIYFMPNILSVLIVGFIFQFIFTLFLPQLADMLGIST
LSTNILGSPDYAWIGIVVMAVWQATAFNTILYLAGLQTVPEDVYEAAAIDGAKAWRRFWSITFPIIAPFFTINMVLALKN
FLMVFDHIIALTGGGPGYATESISVLIYRGGFQGGQFGYQSANAVIYFIIIVALSLFQLRILQKREVQQ

Sequences:

>Translated_229_residues
MRAWSAYGFTFQFAIVSTILVNILSLAIALGLHAKIKCKQTLRAIYFMPNILSVLIVGFIFQFIFTLFLPQLADMLGIST
LSTNILGSPDYAWIGIVVMAVWQATAFNTILYLAGLQTVPEDVYEAAAIDGAKAWRRFWSITFPIIAPFFTINMVLALKN
FLMVFDHIIALTGGGPGYATESISVLIYRGGFQGGQFGYQSANAVIYFIIIVALSLFQLRILQKREVQQ
>Mature_229_residues
MRAWSAYGFTFQFAIVSTILVNILSLAIALGLHAKIKCKQTLRAIYFMPNILSVLIVGFIFQFIFTLFLPQLADMLGIST
LSTNILGSPDYAWIGIVVMAVWQATAFNTILYLAGLQTVPEDVYEAAAIDGAKAWRRFWSITFPIIAPFFTINMVLALKN
FLMVFDHIIALTGGGPGYATESISVLIYRGGFQGGQFGYQSANAVIYFIIIVALSLFQLRILQKREVQQ

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=134, Percent_Identity=37.3134328358209, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787570, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790465, Length=196, Percent_Identity=27.0408163265306, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25442; Mature: 25442

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAWSAYGFTFQFAIVSTILVNILSLAIALGLHAKIKCKQTLRAIYFMPNILSVLIVGFI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FQFIFTLFLPQLADMLGISTLSTNILGSPDYAWIGIVVMAVWQATAFNTILYLAGLQTVP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDVYEAAAIDGAKAWRRFWSITFPIIAPFFTINMVLALKNFLMVFDHIIALTGGGPGYAT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ESISVLIYRGGFQGGQFGYQSANAVIYFIIIVALSLFQLRILQKREVQQ
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRAWSAYGFTFQFAIVSTILVNILSLAIALGLHAKIKCKQTLRAIYFMPNILSVLIVGFI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FQFIFTLFLPQLADMLGISTLSTNILGSPDYAWIGIVVMAVWQATAFNTILYLAGLQTVP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDVYEAAAIDGAKAWRRFWSITFPIIAPFFTINMVLALKNFLMVFDHIIALTGGGPGYAT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ESISVLIYRGGFQGGQFGYQSANAVIYFIIIVALSLFQLRILQKREVQQ
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]