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The map label for this gene is msmE [H]

Identifier: 56965258

GI number: 56965258

Start: 3632180

End: 3633541

Strand: Direct

Name: msmE [H]

Synonym: ABC3496

Alternate gene names: 56965258

Gene position: 3632180-3633541 (Clockwise)

Preceding gene: 56965255

Following gene: 56965259

Centisome position: 84.39

GC content: 45.89

Gene sequence:

>1362_bases
ATGAATACGAAAACGTTTACTCCCACGCAGGACGCTAACGTAAACGTTTACTATAATTTGCGGAGAAAGATATTAACTCG
CCCGCGAAAAGGATCGATCTATTGTTTTTTATTAGGAAAGGAGTCGTTTTCCATGAAACAAATCCTGACCATATTCTTGG
CGTTCACGTCTCTCCTGTTTATGGCCAGCTGCAACGGCGAGTCTTCTAGCGATGGGGTTGTTGAACTCGAATTGTTTTCG
AACAAAACGGAAAACATCAACACGTATCAAAAGCTAATTGACCAATTCGAAGCCGAGCACGAAGGCATTCGCATTAACCT
TTATGCTCCTCCTGACGCTGAGACGTTGCTGCGTACACGGCTTGTCAAAAATGACATGCCCGACATGTTGGCGATTGGCG
GAAATGCCCTATATGGCGAACTGGCGCAAGCCAATTTGCTCGTTGATTATGAAGAGACGTCTCTATTGGACGGTATCCAG
CCAGCCTATTTAGAAATGGTACAAGAGCTGCAAGGGCCAAAGCAAACCGGTATCTACGGCGTGCCGTTTGCCGCGAACGC
CAATACGGTCATTTACAACAAAACGAAATTGGAGGAACTTGGCCTTGATGTGCCAACAACGTGGGAGGAGTTTGTTGCCG
CTTTAGAAATAGCAAAACAGGCTGGCGAAATTCCAATTTACTATACGTTACAAGATGCTTGGACTGCACTGCCCCTTTGG
AATGCTGTTGCCGGTGTTCTCCAGCCTGACGAATTTGCTGCTCAAAAAACAGCAGGCTCCCTCACATTCCAAGCTACACA
TACGGAAGTAACTAGTAAGATTCAAACATTGCTTGATTATGGCCACGACCGCATGTACGGGATTGGTTACGATGATGGGA
ACCGTGCGTTTGCTCAAGAAAACGGCCTCTTCTATTTCCAAGGCAACTGGGCTGTACCTGAATTGTTGACAACCAATCCT
AACCTAGATTTAGGCGTCTTCCCACTCCCCGTCACCGATGACACTGAGCAAAATAAACTCGTTTCTGGCGTCGATGTCCT
GTTTGCAACGCTTAAAGACACCAATCACCCAGAAGAAGCAAAAGCGTTTATCTCATTCATGCTAGAAGAAGCCCCGGCAG
AGCAATATATGGCTGAACAATCAGCGTTTTCTGTGTTGGAAGGCGTTCTGACTGACGATCCTTATATGGAGGGAATTCGT
GAACATTTTGCACAAGGGAATATTGCCAGTTTTCCTGACCATTTTTATTTGCCGGGAATGGGCGTTGAAAATATGATACA
GGAGTTTATGTACAGAGGAAATGAACAAGATTTCTTGAAACGAATGGACCGGGAATGGGACCAAACCCAACTGCGGTACT
AG

Upstream 100 bases:

>100_bases
CACCGATCGTTGATTTCTTCTTGTCAAAAGCAAGCGTGCTTGTTTTGCATGTTCTACAACTTTCAGAACATACTTGACAA
TCTGACCTGCGGAAATGATA

Downstream 100 bases:

>100_bases
AAAGGAGCCACCAATGAAAACAAAACAACGGGTGTTTTTGCTTATGACCCTTCCCGCTGTGCTTCTCTTTTTCTTGTTCC
ATACCTTTCCGCTTTTGCAA

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MNTKTFTPTQDANVNVYYNLRRKILTRPRKGSIYCFLLGKESFSMKQILTIFLAFTSLLFMASCNGESSSDGVVELELFS
NKTENINTYQKLIDQFEAEHEGIRINLYAPPDAETLLRTRLVKNDMPDMLAIGGNALYGELAQANLLVDYEETSLLDGIQ
PAYLEMVQELQGPKQTGIYGVPFAANANTVIYNKTKLEELGLDVPTTWEEFVAALEIAKQAGEIPIYYTLQDAWTALPLW
NAVAGVLQPDEFAAQKTAGSLTFQATHTEVTSKIQTLLDYGHDRMYGIGYDDGNRAFAQENGLFYFQGNWAVPELLTTNP
NLDLGVFPLPVTDDTEQNKLVSGVDVLFATLKDTNHPEEAKAFISFMLEEAPAEQYMAEQSAFSVLEGVLTDDPYMEGIR
EHFAQGNIASFPDHFYLPGMGVENMIQEFMYRGNEQDFLKRMDREWDQTQLRY

Sequences:

>Translated_453_residues
MNTKTFTPTQDANVNVYYNLRRKILTRPRKGSIYCFLLGKESFSMKQILTIFLAFTSLLFMASCNGESSSDGVVELELFS
NKTENINTYQKLIDQFEAEHEGIRINLYAPPDAETLLRTRLVKNDMPDMLAIGGNALYGELAQANLLVDYEETSLLDGIQ
PAYLEMVQELQGPKQTGIYGVPFAANANTVIYNKTKLEELGLDVPTTWEEFVAALEIAKQAGEIPIYYTLQDAWTALPLW
NAVAGVLQPDEFAAQKTAGSLTFQATHTEVTSKIQTLLDYGHDRMYGIGYDDGNRAFAQENGLFYFQGNWAVPELLTTNP
NLDLGVFPLPVTDDTEQNKLVSGVDVLFATLKDTNHPEEAKAFISFMLEEAPAEQYMAEQSAFSVLEGVLTDDPYMEGIR
EHFAQGNIASFPDHFYLPGMGVENMIQEFMYRGNEQDFLKRMDREWDQTQLRY
>Mature_453_residues
MNTKTFTPTQDANVNVYYNLRRKILTRPRKGSIYCFLLGKESFSMKQILTIFLAFTSLLFMASCNGESSSDGVVELELFS
NKTENINTYQKLIDQFEAEHEGIRINLYAPPDAETLLRTRLVKNDMPDMLAIGGNALYGELAQANLLVDYEETSLLDGIQ
PAYLEMVQELQGPKQTGIYGVPFAANANTVIYNKTKLEELGLDVPTTWEEFVAALEIAKQAGEIPIYYTLQDAWTALPLW
NAVAGVLQPDEFAAQKTAGSLTFQATHTEVTSKIQTLLDYGHDRMYGIGYDDGNRAFAQENGLFYFQGNWAVPELLTTNP
NLDLGVFPLPVTDDTEQNKLVSGVDVLFATLKDTNHPEEAKAFISFMLEEAPAEQYMAEQSAFSVLEGVLTDDPYMEGIR
EHFAQGNIASFPDHFYLPGMGVENMIQEFMYRGNEQDFLKRMDREWDQTQLRY

Specific function: Involved in a binding protein-dependent transport system responsible for the uptake of melibiose, raffinose and isomaltotriose [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 51067; Mature: 51067

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKTFTPTQDANVNVYYNLRRKILTRPRKGSIYCFLLGKESFSMKQILTIFLAFTSLLF
CCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
MASCNGESSSDGVVELELFSNKTENINTYQKLIDQFEAEHEGIRINLYAPPDAETLLRTR
HHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
LVKNDMPDMLAIGGNALYGELAQANLLVDYEETSLLDGIQPAYLEMVQELQGPKQTGIYG
HHHCCCCCHHHCCCCHHHHHHHHCEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCEEE
VPFAANANTVIYNKTKLEELGLDVPTTWEEFVAALEIAKQAGEIPIYYTLQDAWTALPLW
CCCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
NAVAGVLQPDEFAAQKTAGSLTFQATHTEVTSKIQTLLDYGHDRMYGIGYDDGNRAFAQE
HHHHHCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEC
NGLFYFQGNWAVPELLTTNPNLDLGVFPLPVTDDTEQNKLVSGVDVLFATLKDTNHPEEA
CCEEEEECCCCCCHHEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
KAFISFMLEEAPAEQYMAEQSAFSVLEGVLTDDPYMEGIREHFAQGNIASFPDHFYLPGM
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
GVENMIQEFMYRGNEQDFLKRMDREWDQTQLRY
CHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MNTKTFTPTQDANVNVYYNLRRKILTRPRKGSIYCFLLGKESFSMKQILTIFLAFTSLLF
CCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
MASCNGESSSDGVVELELFSNKTENINTYQKLIDQFEAEHEGIRINLYAPPDAETLLRTR
HHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
LVKNDMPDMLAIGGNALYGELAQANLLVDYEETSLLDGIQPAYLEMVQELQGPKQTGIYG
HHHCCCCCHHHCCCCHHHHHHHHCEEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCEEE
VPFAANANTVIYNKTKLEELGLDVPTTWEEFVAALEIAKQAGEIPIYYTLQDAWTALPLW
CCCCCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
NAVAGVLQPDEFAAQKTAGSLTFQATHTEVTSKIQTLLDYGHDRMYGIGYDDGNRAFAQE
HHHHHCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEC
NGLFYFQGNWAVPELLTTNPNLDLGVFPLPVTDDTEQNKLVSGVDVLFATLKDTNHPEEA
CCEEEEECCCCCCHHEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
KAFISFMLEEAPAEQYMAEQSAFSVLEGVLTDDPYMEGIREHFAQGNIASFPDHFYLPGM
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
GVENMIQEFMYRGNEQDFLKRMDREWDQTQLRY
CHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]