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The map label for this gene is amyC [H]

Identifier: 56965260

GI number: 56965260

Start: 3634418

End: 3635239

Strand: Direct

Name: amyC [H]

Synonym: ABC3498

Alternate gene names: 56965260

Gene position: 3634418-3635239 (Clockwise)

Preceding gene: 56965259

Following gene: 56965262

Centisome position: 84.45

GC content: 43.55

Gene sequence:

>822_bases
ATGAAAAAAAACAAAACAAACTGGCTTGTAACAGGGCTGCTTTTGCTCGGTTCACTGTTTATTCTCTTGCCGCTTTACTT
AACGATCAACATTGCTTTAAAGACGCCAGCAGAAATGGGCGAACCGTTGTTGTCGCTGCCAAAGGAATGGCGCTTTCAAA
ACTTTCTAGATGCAATCGAATTAACAAACTTTTTTAACGCCCTGTCGAATAGCTTTACGGTAACAGCAGCCGTTGTCGTG
CTAACGGTGCTCAGCAATTCCCTTGTTTCGTACGCCATCGCCCGTAATATGCACAAACGGTTTTTTAAAGCTTTGTTTTA
TTACTTTGTTAGTGCGATGTTCGTGCCGTTCCCGATCATTATGCTTCCTCTTGTACGGCAGACCGCGATTTGGAATATGG
ATAATGTATTCGGGCTAATCTGCCTATACATCGTGTTTCAACTGTCTTTCAACGTATTTATATACGTTGGCTATATTAAA
TCAATTCCTGTTGAGCTTGAGGAGGCTGCAATTATGGATGGCGCCAGCGCTTGGGGAACTTTTTGGAAAGTGATTTTTCC
GTTGCTGGCGCCGATGAATGCAACAGTCGCGATTTTGACTGCTTTATACGCGTGGAATGATTTTTTGTTGCCGCTCGTGA
TCCTGACAAATCCAGCCGACGCCACGTTGCCATTAACACAGTACATTTTCCAATCGGAATTTAGCACAAATTACAATTTG
GCGTTCGCTTCTTATTTGCTGGCGATGCTGCCATTAGTTATCGTCTACTTAATCGCCCAGCGTTGGATTATTAGCAACGT
AACGCGTGGGGCAGTTAAATAG

Upstream 100 bases:

>100_bases
TTGGCTACCAATCGGCCAACGCTGTGATTTATTTCATTATCATTGTCGCTTTGTCTCTCTTCCAGCTCCGGATCTTGCAG
AAACGGGAGGTGCAGCAGTA

Downstream 100 bases:

>100_bases
CCAGTTGAGTTTCTCTCAACTGGCTTTCCTCCTACCTACTTCCCTCTGTCAAGGAGCAAACGGGGCTTCAAGGCCGACTT
CAGGATGTTTGTTCGCTTGT

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKKNKTNWLVTGLLLLGSLFILLPLYLTINIALKTPAEMGEPLLSLPKEWRFQNFLDAIELTNFFNALSNSFTVTAAVVV
LTVLSNSLVSYAIARNMHKRFFKALFYYFVSAMFVPFPIIMLPLVRQTAIWNMDNVFGLICLYIVFQLSFNVFIYVGYIK
SIPVELEEAAIMDGASAWGTFWKVIFPLLAPMNATVAILTALYAWNDFLLPLVILTNPADATLPLTQYIFQSEFSTNYNL
AFASYLLAMLPLVIVYLIAQRWIISNVTRGAVK

Sequences:

>Translated_273_residues
MKKNKTNWLVTGLLLLGSLFILLPLYLTINIALKTPAEMGEPLLSLPKEWRFQNFLDAIELTNFFNALSNSFTVTAAVVV
LTVLSNSLVSYAIARNMHKRFFKALFYYFVSAMFVPFPIIMLPLVRQTAIWNMDNVFGLICLYIVFQLSFNVFIYVGYIK
SIPVELEEAAIMDGASAWGTFWKVIFPLLAPMNATVAILTALYAWNDFLLPLVILTNPADATLPLTQYIFQSEFSTNYNL
AFASYLLAMLPLVIVYLIAQRWIISNVTRGAVK
>Mature_273_residues
MKKNKTNWLVTGLLLLGSLFILLPLYLTINIALKTPAEMGEPLLSLPKEWRFQNFLDAIELTNFFNALSNSFTVTAAVVV
LTVLSNSLVSYAIARNMHKRFFKALFYYFVSAMFVPFPIIMLPLVRQTAIWNMDNVFGLICLYIVFQLSFNVFIYVGYIK
SIPVELEEAAIMDGASAWGTFWKVIFPLLAPMNATVAILTALYAWNDFLLPLVILTNPADATLPLTQYIFQSEFSTNYNL
AFASYLLAMLPLVIVYLIAQRWIISNVTRGAVK

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=27.4021352313167, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789860, Length=260, Percent_Identity=26.1538461538462, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790464, Length=139, Percent_Identity=30.2158273381295, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30885; Mature: 30885

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50928 ABC_TM1 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNKTNWLVTGLLLLGSLFILLPLYLTINIALKTPAEMGEPLLSLPKEWRFQNFLDAIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCHHHHCCHHHHHHHHHHHHH
LTNFFNALSNSFTVTAAVVVLTVLSNSLVSYAIARNMHKRFFKALFYYFVSAMFVPFPII
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLPLVRQTAIWNMDNVFGLICLYIVFQLSFNVFIYVGYIKSIPVELEEAAIMDGASAWGT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCHHHHHHHHCCHHHHHH
FWKVIFPLLAPMNATVAILTALYAWNDFLLPLVILTNPADATLPLTQYIFQSEFSTNYNL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCHH
AFASYLLAMLPLVIVYLIAQRWIISNVTRGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKNKTNWLVTGLLLLGSLFILLPLYLTINIALKTPAEMGEPLLSLPKEWRFQNFLDAIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCHHHHCCHHHHHHHHHHHHH
LTNFFNALSNSFTVTAAVVVLTVLSNSLVSYAIARNMHKRFFKALFYYFVSAMFVPFPII
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLPLVRQTAIWNMDNVFGLICLYIVFQLSFNVFIYVGYIKSIPVELEEAAIMDGASAWGT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCHHHHHHHHCCHHHHHH
FWKVIFPLLAPMNATVAILTALYAWNDFLLPLVILTNPADATLPLTQYIFQSEFSTNYNL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCHH
AFASYLLAMLPLVIVYLIAQRWIISNVTRGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]